Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0196 ATGAGTGTTTCAAGGTTTATCAAGTGTGTTACTGTTGGTGATGGTGCTGTTGGGAAAACTTGTATGCTTATTTCCTACACCAGCAACACTTTCCCCACTGATTATGTGCCAACCGTTTTCGACAATTTTAGCGCAAATGTAGTTGTGGATGGCAACACAGTCAACCTAGGCTTGTGGGATACTGCGGGCCAGGAAGATTACAATAGATTGAGGCCTTTGAGCTACCGCGGAGCAGATGTATTTCTGTTAGCATTCTCTCTCCTCAGCAGGGCTAGCTACGAAAACATCGCCAAAAAATGGATTCCTGAACTTAGGCATTATGCTCCTGGTGTACCAGTTATTCTCGTCGGCACTAAGCTCGGTTATATTCTTCACTACCTTTCTAATTTTCACCTTCCAAGTGCTGCATTTGATAAACTTTCTTGTTTTATTTGTTTGATAATGATTGTTTCTCAATGCTAG 462 41.99 MSVSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENIAKKWIPELRHYAPGVPVILVGTKLGYILHYLSNFHLPSAAFDKLSCFICLIMIVSQC 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1510907 1514806 - Sed0011175.2 Sed01g0196 699500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0196 153 Gene3D - 1 124 IPR027417 -
Sed01g0196 153 NCBIfam small GTP-binding protein domain 7 119 IPR005225 GO:0005525(InterPro)
Sed01g0196 153 SMART ras_sub_4 4 153 - -
Sed01g0196 153 PANTHER RHO FAMILY GTPASE 5 120 IPR003578 GO:0003924(PANTHER)|GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005856(PANTHER)|GO:0007163(PANTHER)|GO:0007264(InterPro)|GO:0008360(PANTHER)|GO:0019901(PANTHER)|GO:0030865(PANTHER)|GO:0031410(PANTHER)|GO:0032956(PANTHER)|GO:0042995(PANTHER)
Sed01g0196 153 ProSiteProfiles small GTPase Rho family profile. 1 153 - -
Sed01g0196 153 ProSiteProfiles small GTPase Ras family profile. 2 153 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed01g0196 153 PRINTS Transforming protein P21 ras signature 30 46 - -
Sed01g0196 153 PRINTS Transforming protein P21 ras signature 7 28 - -
Sed01g0196 153 PRINTS Transforming protein P21 ras signature 109 122 - -
Sed01g0196 153 PRINTS Transforming protein P21 ras signature 47 69 - -
Sed01g0196 153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 120 IPR027417 -
Sed01g0196 153 SMART rab_sub_5 7 147 - -
Sed01g0196 153 Pfam Ras family 8 120 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed01g0196 153 ProSiteProfiles small GTPase Rab1 family profile. 2 153 - -
Sed01g0196 153 SMART rho_sub_3 9 153 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed01g0196 153 FunFam Rho family GTPase 4 124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0196 K04392 - - csv:101219263 236.884
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0196 Sed-Chr1:1510907 Sed03g1680 Sed-Chr3:10868369 2.30E-64 dispersed
Sed01g0195 Sed-Chr1:1510907 Sed01g0196 Sed-Chr1:1510907 4.10E-66 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g158 . . . . . . Bma05g00366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00494 . Chy11g00256 . . . . . . Bpe05g00288 . . Sed01g0196 Cmo02g00254 . . . . . . Cpe05g01373 Bhi10g01852 Tan05g1137 Cmetu11g1470 . Hepe08g0292 . . Cla02g01166 Cam02g1244 Cec02g1253 Cco02g1294 Clacu02g1226 Cmu02g1193 Cre02g1505 . Csa02g01391 . Cme11g00381
Vvi4g1156 Blo04g00979 Blo16g00089 . . Bpe15g00483 Bpe13g00407 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0862 Cone12ag0826 . . . . . . . . Bda11g01828 . . . . Bma06g00090 Sed01g0196 . . . . . . . . Bhi10g01852 Tan05g1137 Cmetu11g1470 . Hepe08g0292 . . . . . . . . . Lsi07g01090 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0067547 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1