Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0197 ATGGAAACTCGTAGCAGAAAGCGGGCGGAGGCCTCTTCATCAGCCCCTTCTTCTTCTTCGTCTTCTGGTCCTACTACCCGTTCCACCAAGCGTGCTCGTTTCTCTGGTACTTCTTCCTTGGATCTTCCCGTTTTGACTCGTTCTCGCTATTTTCGAACCCAGGAACCATCTAACACCAGTACTCCAATGGACTCCACTAATGAATCTTCTGGTTCGCGCCGACGTGGGAAGAATTCGGATAGAGAAAACTCGGATAAGGGGAAGGAGAAGGAACATGAGGTTAGAATTGGGGATAGAGAAAGAAATGTGGAGCATAGCTTTGGGATGAATATTGAAGGCAGTGGCGGTGGGGAGGATGATGATAATGATAGTGAGGTAGGATTGGGTGTTTTGCATCAGAATTTATCTACAGCAAGTAGTGCCCTTCAAGGACTTCTCAGGAAACTCGGTGCTGGACTGGATGATTTGCTTCCTTCCTCTGCAATTGCATCGGCTTCATCCTCGCAGCAGAGAGGACGGCTTAAGAAAATCTTATCTGGGTTGAGAGCAGATGGAGAAGAAGGGAAGCAGGTTGAGGCATTGACACAACTTTGTGAGATGCTCTCTATTGGCACTGAGGAATCTCTAAGTACTTTCTCTGTGGATTCCTTTGTCCCTGTCCTTGTCGGGTTACTTAATCACGAAAGCAATGCTGATATAATGCTTCTAGCGGCCAGGGCACTAACCCATCTGTGTGATGTTCTACCTTCTTCATGTGCTGCTGTTGTGCATTATGGTGCTGTTTCCTGCTTCTGTGCTAGATTGCTGACTATAGAATACATGGACTTAGCTGAACAGTCCCTGCAAGCTTTAAAGAAGATATCCCAGGAACACCCCACTGCCTGCCTGCGAGCAGGAGCTCTTATGGCTGTGCTTTCATATTTAGATTTCTTCTCCACAGGAGTTCAGCGAGTCGCATTGTCAACTGCTGCTAATATGTGCAAGAAGCTTCCTTCAGATGCAGCCGACTTTGTGATGGAAGCTGTTCCCTTGCTAACAAACCTTCTTCAGTATCATGATGCAAAGGTGTTAGAGCATGCTTCAGCTTGTTTGACTCGCATTGCAGAGGCCTTTGCATCATCTCCTGAAAAATTAGATGAATTATGTAACCATGGACTTGTTACACAAGCTGCCTCACTTATTTCCACTAGTAGTACTGGAGGTGGACAATCAACTCTCAGCTCAGCTACTTACACTGGATTAATACGACTTCTTTCCACATGTGCAAGTGGGTCTGCCTTAGGTGCAAAAACTTTGCTGCTTCTTGGGATCAGTGGGATTCTTAAAGATATATTGTCTGGTTCTGGCGTGTCTACTAATACATCTGTTTCGCCTGCATTAAATAGACCACAAGAGCAGATTTTTGAGATAGTCAACTTGGCAAATGAGCTTCTACCCCCTCTACCTCAAGGAGCCATTTCCTTTCCGCCCAACTTTAATTCATTTGTTAAAGGACCCGTCATCAAGAAGCCTTCTACTAGCGGTTCTGTGAATGAAGAAGATCCATCTGATAGTGCCCCAGAGGTTTCAACTCGTGAGAAACTCTTAAAGGATCAGCCTGAGCTCCTCCACCAGTTTGGAATGGATCTCCTTCCTATCTTAATACAGATCTACGGGTCCAGTGTGAATGGTCCAGTACGCCATAAATGTCTCTCAGGAATTGGTAAATTGATGTACTTCAGCACTCCAGAGATGATACAATCATTATTGAATGTGACTAATATCGCAAGTTTTCTAGCTGGTGTTTTGGCATGGAAAGATCCACACATACTGATTCCTGCTCTCCAAATTGCTGAGATTCTTATGGAAAAGCTTCATGAAACATTTTCCAAGATGTTTCTTCGAGAGGGTGTTGTTTATGCTGTTGACCAGCTTATCTTAGCTAATAACCAAAATACAGCTTCCCAAGCCGATTCTATTGAGAAGGATAATAACACTGCATCTGGAACTTCATCACGCACGCGACGTCATAGAAGGCGCAGTGGAAATATGAATCCGGATGCAAGTCTACTAGATGAAAACAAGAACCCTGTTTCTGGAAGTGGTGTTTCACAGGGTTCGGTGGAGGCTCCGAATAACTCTAATATTCGAACAGCTGTGAGTGCCTGTGCCAATGCTTTTAAAACCAAGTACTTTCCCTTAGATCCAGGAGACGTTGAAGTTGGAGTTACAGATGATCTCTTGCGTTTGAAGAATCTCTGTGTCAAGTTAAGTGCTGGCATTGATGATCAGAAGACTAAGTCAAAAGGAAAGTCAAAAGCTTCAGGGTCCCGCCTAGATGATATTATTGCAAACAAGGAAGATCATTTAACTGGTGTAATATCTGAAATGCTTGTTGAATTAGGCAAAGATGATGGTGTTTCCACTTTTGAATTTATTGGTAGTGGCGTTGTTGGAGTTCTGCTTAACTACTTTTCTTGCGGATACTTTTCTAAAGGAAGAATTTCTGAAGCTGAGTTGCCAAAGCTTCGACAACAAGTACTTAAAAGATTTAAATCATTTATTTCTGTTTCCCTTCCTGCAAGCACTAATGGGGGGAGAGTAGCTCCTATGACAGTCTTAGTTCAAAAGCTACAGAGTTCTTTATCCTCGTTGGAGCGATTTCCTGTTGTCCTGAGTCAATCTTCTAGATCATCCAATGGTAGTGCACGCCTTTCCTCTGGACTCGGTGTATTATCTCAGCCATTTAAGTTACGACTTTGTCGAGCCCAAGGAGAAAAAATGCTTCGTGATTATTCATCGAATATTGTTCTGATTGATCCATTGGCAAGCTTAGCTGCTGTTGAAGAATTTCTGTGGCCTAGAGTTCAGAAAAGTGAATCTGGTCAGAAACCTTCAGCATCTGGTGGAAACTCAGATTCCGGAACAATGCCTACAGGAGCTGTTGCTTCACCAGGGTTAACGCCAACTCCTGGTTCAACTACTCGCCGATACTCTACTAGGTCTAGATCATCGATGACTATTGGAGAAAGGGCAGGGAATGAATCTTCACAGGAGAAAAGCACTTCAAAGGGCAAGGGCAAAGCTATTCTAAAGCCTGCTTGGGAGGAGAAGAGAGGCCTACAAACTAGAAGTTCTACTCGTAGAAAAGCAGCTGCGGACAAGGATTCTCAAATGAAGCCTGCAAATGGAGAGACCACTTCCGAGGATGAAGAATTGAATCTATCCTCCATCCAGATTGATGATTCTTTAGTGATTGAGGATGATGATATTTCTGATGATGAAGATGATGACCACGATGATGTGCTGCAGGATGACTCTCTTCCTCTTTGTATGCCTGAAAAGGTGCATGATGTCAAATTGGGTGACTCAGTTGAAGATGGTGGCGCTGGTCCAGCTACAAGTGATAGCCAGATTCATTCAACATTTGGCTCTAGCAGTAAAGCTGCTACAGTCAGGGGTTCTAGTTCTCCTGATCATAGGAGTGGCACCCCTTATAGTTCAAGGGGAGGCATGTCATTTGCTGCTGCTGCAATGGCTGGGCTTGGGGCAGCTAATGGTAGAGCTTTCCGTGGAGGTCGGGATCCACACGGACGTCCCCTCTTTGGTGGCTCCAATGATAACCAGAAATTAGTCTTCTCTTCTGGTGAGAAGCAGCTTGATAGGCATTTGACAATATACCAAGCTGTTCAACGGCAGCTTGTTTTGAATGAGGATGATGATGAGAGGTTTGCTGGTACTGGCAGTGATTTCTTATCTAATGATGGGAGCAGTTTATGGGGTGACATATATACTATTACATATCAGAGGTTAGATAACCAATCCGAAAGAGCTTTAGCTGGGGCATCAAGCTCCTCTAAATCTAAATCTACCAAATGTGTATCGACTTCCAGTTCAAATTCAGAGTCTCAGTTCCATCAAATGTCACTTTTAGATAGTATTTTACAAGGAAAACTTCCATGTGATTTGGACAAATCTAATTCTACATATGATATATTATCCTTACTGCGTGTACTTGAGGGATTGAATCAGCTTGCTCCACGCTTAAGAGCACAGATAGTGTCAGACCATTTTGCAGAGGGAAAGATCACTACAGCTGATGAGTTGGGTGGAATTGGTGGAAAGGTTCCTCATGAGGAGTTCATCAACAGTAAGCTTACTCCCAAATTGGCTCGTCAAATACAGGATGCTCTTGCACTATGCAGTGGAAGTCTTCCCTCATGGTGTTACCAATTGACTAAGGCATGTCCATTCTTGTTTCCTTTTGAGACTCGGCGACAGTATTTCTATTCAACTGCATTTGGGCTGTCACGCGCATTATATCGGCTACATCAGCAACAAGGAGCTGATGGTCATGGAACTGTAAATGAACGAGAGGGAAGGGTTGGAAGATTGCAGCGCCAAAAAGTTCGTGTCTCCCGTAATCGTATATTGGATTCTGCTGCAAAAGTTATGGAGATGTATTCTAGCCAAAAGGCCGTTCTTGAAGTAGAGTATTTTGGTGAAGTGGGAACTGGATTAGGTCCTACCCTTGAATTCTACACACTTCTAAGTCATGAATTGCAGAGGGCTGGACTTGGGATGTGGAGGTCTAATTCTTCACCAGAGTCGACAGTAGGTGGTGACGATGGGCAGCTTAGGAAGGCTAAAGGTGGCTCTAGGCTTTTTTCTGATGCAGGCAATGTTGATATCATCCAAACTTCTCTTGGTTTGTTTCCACGACCTTGGCCACCAAATGCCGATTCTTCTGAGGGCAGCCAATTCGTGAAGTTGATTGAATATTTCCGGCTTGTTGGTCGTGTGATGGCAAAAGCTCTGCAAGATGGAAGACTATTGGATCTACCACTCTCAACAGCATTTTATAAGCTTGTTCTTGGTCACGATCTAGATTTACATGATATCCTCTCATTTGATCCCGAGCTTGGGAAGAACTTGCAAGAATTTCAGGCTCTTGTATGCCGGAAACAGTTTTTAGAATTGACAAATGGTGATAATCATAGTACAATTTCCAACTTGTCTTTCCACGGGGTTGCAGTAGAAGATCTCTCTTTGGACTTTACACTTCCTGGTTATCCGGACTACATTTTGAAACCAGGAGATGAAACTGTTGATATTCACAACTTGGAGGAGTACATATCCCTTGTACTAGATGCAACTGTGAAGACTGGAATAATGCGGCAAATGGAAGCATTTACTGCCGGATTCAATCAGGTTTTTGACATCTCAGCATTACGCATATTTATTCCTCACGAGTTGGATAATTTACTATGTGGCCGTAGAGAACTGTGGAAGGCTGACACGCTGGTCGATCATATTAAATTTGATCATGGATACACTGCCAAGAGTCCTGCAATAGTCAATTTTCTCGAGATTATGGGTGAATTCACGCCGGAGCAGCAGCGATCATTCTGCCAGTTCGTTACAGGTGCACCTAGGCTTCCACCAGGTGGCCTTGCAGTGTTGAACCCAAAATTGACCATTGTGAGAAAGCACTCATCAACTGCAACTAATGCAGCAACCAGTGGGACCGGGGCGTCCGAACTAGCAGATGATGATTTGCCTAGTGTCATGACATGCGCCAATTACCTTAAGCTTCCTCCGTACTCAACCAAGGAAATAATGTACAAGAAACTAATCTACGCCATCAATGAGGGGCAAGGTTCCTTTGATTTGTCATGA 5658 43.96 METRSRKRAEASSSAPSSSSSSGPTTRSTKRARFSGTSSLDLPVLTRSRYFRTQEPSNTSTPMDSTNESSGSRRRGKNSDRENSDKGKEKEHEVRIGDRERNVEHSFGMNIEGSGGGEDDDNDSEVGLGVLHQNLSTASSALQGLLRKLGAGLDDLLPSSAIASASSSQQRGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNADIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASACLTRIAEAFASSPEKLDELCNHGLVTQAASLISTSSTGGGQSTLSSATYTGLIRLLSTCASGSALGAKTLLLLGISGILKDILSGSGVSTNTSVSPALNRPQEQIFEIVNLANELLPPLPQGAISFPPNFNSFVKGPVIKKPSTSGSVNEEDPSDSAPEVSTREKLLKDQPELLHQFGMDLLPILIQIYGSSVNGPVRHKCLSGIGKLMYFSTPEMIQSLLNVTNIASFLAGVLAWKDPHILIPALQIAEILMEKLHETFSKMFLREGVVYAVDQLILANNQNTASQADSIEKDNNTASGTSSRTRRHRRRSGNMNPDASLLDENKNPVSGSGVSQGSVEAPNNSNIRTAVSACANAFKTKYFPLDPGDVEVGVTDDLLRLKNLCVKLSAGIDDQKTKSKGKSKASGSRLDDIIANKEDHLTGVISEMLVELGKDDGVSTFEFIGSGVVGVLLNYFSCGYFSKGRISEAELPKLRQQVLKRFKSFISVSLPASTNGGRVAPMTVLVQKLQSSLSSLERFPVVLSQSSRSSNGSARLSSGLGVLSQPFKLRLCRAQGEKMLRDYSSNIVLIDPLASLAAVEEFLWPRVQKSESGQKPSASGGNSDSGTMPTGAVASPGLTPTPGSTTRRYSTRSRSSMTIGERAGNESSQEKSTSKGKGKAILKPAWEEKRGLQTRSSTRRKAAADKDSQMKPANGETTSEDEELNLSSIQIDDSLVIEDDDISDDEDDDHDDVLQDDSLPLCMPEKVHDVKLGDSVEDGGAGPATSDSQIHSTFGSSSKAATVRGSSSPDHRSGTPYSSRGGMSFAAAAMAGLGAANGRAFRGGRDPHGRPLFGGSNDNQKLVFSSGEKQLDRHLTIYQAVQRQLVLNEDDDERFAGTGSDFLSNDGSSLWGDIYTITYQRLDNQSERALAGASSSSKSKSTKCVSTSSSNSESQFHQMSLLDSILQGKLPCDLDKSNSTYDILSLLRVLEGLNQLAPRLRAQIVSDHFAEGKITTADELGGIGGKVPHEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLHQQQGADGHGTVNEREGRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQRAGLGMWRSNSSPESTVGGDDGQLRKAKGGSRLFSDAGNVDIIQTSLGLFPRPWPPNADSSEGSQFVKLIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLGHDLDLHDILSFDPELGKNLQEFQALVCRKQFLELTNGDNHSTISNLSFHGVAVEDLSLDFTLPGYPDYILKPGDETVDIHNLEEYISLVLDATVKTGIMRQMEAFTAGFNQVFDISALRIFIPHELDNLLCGRRELWKADTLVDHIKFDHGYTAKSPAIVNFLEIMGEFTPEQQRSFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTATNAATSGTGASELADDDLPSVMTCANYLKLPPYSTKEIMYKKLIYAINEGQGSFDLS 1885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1519695 1532563 - Sed0004775.1 Sed01g0197 699501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0197 1885 Gene3D Hect, E3 ligase catalytic domain 1756 1883 - -
Sed01g0197 1885 Gene3D - 175 656 IPR011989 -
Sed01g0197 1885 MobiDBLite consensus disorder prediction 649 704 - -
Sed01g0197 1885 MobiDBLite consensus disorder prediction 1053 1074 - -
Sed01g0197 1885 MobiDBLite consensus disorder prediction 1014 1049 - -
Sed01g0197 1885 FunFam HECT ubiquitin protein ligase family protein KAK 167 481 - -
Sed01g0197 1885 CDD HECTc 1461 1880 IPR000569 GO:0004842(InterPro)
Sed01g0197 1885 MobiDBLite consensus disorder prediction 649 664 - -
Sed01g0197 1885 SUPERFAMILY Hect, E3 ligase catalytic domain 1453 1878 IPR035983 GO:0004842(InterPro)
Sed01g0197 1885 Pfam HECT-domain (ubiquitin-transferase) 1559 1885 IPR000569 GO:0004842(InterPro)
Sed01g0197 1885 MobiDBLite consensus disorder prediction 1272 1293 - -
Sed01g0197 1885 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1754 1884 - -
Sed01g0197 1885 SMART hect_3 1472 1885 IPR000569 GO:0004842(InterPro)
Sed01g0197 1885 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 128 1885 IPR045322 GO:0000209(PANTHER)|GO:0006511(InterPro)|GO:0043161(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)
Sed01g0197 1885 FunFam E3 ubiquitin-protein ligase UPL3 1402 1646 - -
Sed01g0197 1885 MobiDBLite consensus disorder prediction 1127 1162 - -
Sed01g0197 1885 MobiDBLite consensus disorder prediction 680 704 - -
Sed01g0197 1885 SMART arm_5 331 369 IPR000225 GO:0005515(InterPro)
Sed01g0197 1885 SMART arm_5 288 328 IPR000225 GO:0005515(InterPro)
Sed01g0197 1885 SMART arm_5 205 246 IPR000225 GO:0005515(InterPro)
Sed01g0197 1885 Gene3D Hect, E3 ligase catalytic domains 1401 1647 - -
Sed01g0197 1885 MobiDBLite consensus disorder prediction 70 106 - -
Sed01g0197 1885 MobiDBLite consensus disorder prediction 503 524 - -
Sed01g0197 1885 MobiDBLite consensus disorder prediction 10 69 - -
Sed01g0197 1885 MobiDBLite consensus disorder prediction 1076 1096 - -
Sed01g0197 1885 MobiDBLite consensus disorder prediction 952 1013 - -
Sed01g0197 1885 SUPERFAMILY ARM repeat 174 653 IPR016024 -
Sed01g0197 1885 ProSiteProfiles HECT domain profile. 1485 1885 IPR000569 GO:0004842(InterPro)
Sed01g0197 1885 MobiDBLite consensus disorder prediction 1 126 - -
Sed01g0197 1885 MobiDBLite consensus disorder prediction 951 1162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0197 K10590 - - csv:101218793 3133.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0197 Sed-Chr1:1519695 Sed05g3487 Sed-Chr5:43651327 0.00E+00 dispersed
Sed01g0197 Sed-Chr1:1519695 Sed05g3486 Sed-Chr5:43651327 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
Vvi4g1154 . . . . . . . . . Cmo20g01136 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0197 . . . Cma20g01106 . . Cpe05g01103 . Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48