Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0206 ATGGCGATGGCTTTCAAGATGGCAACCACAGGAATGTGGGTGAGCGATGAGTGCAAGAATTCGTTCATGGAGATGAAATGGAAGAAGGTGCACAGGTATATCGTGTTCAAGATCGATGAAGGATCGCGGTTGGTTACGGTGGACAAGGTCGGCGGTCCGGCGGAAAGCTACGACGATCTCACCGCCTCCTTGCCGACCGACGATTGTCGATATGCGGTGTTCGATTTCGACTTCGTCACCGTTGACAAGTGCCAGAAGAGCAAGATCTTCTTCATCGCTTGGTCACCGACGGCATCAAGAATTAGAGCAAAAATTCTATACGCAACTTCAAAAGATGGGCTGAGGAGAGTGCTGGAAGGTATTCATTACGATGTTCAAGCAACAGATCCAACGGAGATGGGGATCGATGTGATCAAGGACAGAGCCAAATAA 432 49.31 MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPTDDCRYAVFDFDFVTVDKCQKSKIFFIAWSPTASRIRAKILYATSKDGLRRVLEGIHYDVQATDPTEMGIDVIKDRAK 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1654025 1655759 + Sed0018058.1 Sed01g0206 699510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0206 143 PANTHER COFILIN-RELATED 7 142 IPR017904 GO:0005737(PANTHER)|GO:0015629(PANTHER)|GO:0015629(InterPro)|GO:0030042(InterPro)|GO:0030042(PANTHER)|GO:0051015(PANTHER)|GO:0051017(PANTHER)
Sed01g0206 143 SUPERFAMILY Actin depolymerizing proteins 6 141 - -
Sed01g0206 143 Pfam Cofilin/tropomyosin-type actin-binding protein 18 141 IPR002108 GO:0003779(InterPro)
Sed01g0206 143 SMART adf_2 16 143 IPR002108 GO:0003779(InterPro)
Sed01g0206 143 FunFam Actin-depolymerizing factor 2 5 143 - -
Sed01g0206 143 ProSiteProfiles ADF-H domain profile. 11 143 IPR002108 GO:0003779(InterPro)
Sed01g0206 143 CDD ADF_cofilin_like 10 142 IPR017904 GO:0015629(InterPro)|GO:0030042(InterPro)
Sed01g0206 143 Gene3D Severin 8 143 IPR029006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0206 K05765 - - csv:101217451 285.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0206 Sed-Chr1:1654025 Sed05g3604 Sed-Chr5:44430652 2.00E-75 dispersed
Sed01g0206 Sed-Chr1:1654025 Sed01g4310 Sed-Chr1:71247357 1.80E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g144 . . . . . . . . . . Cma02g00246 Cma20g00758 . Car20g00659 . . . . . . . . . . . . . . . . . Cone12ag1226 . . . Lsi10g00487 . . . . . . . . . . . Sed01g0206 Cmo02g00247 Cmo20g00754 . . . . . . Bhi10g01861 Tan05g1152 Cmetu11g1192 . Hepe08g0285 . . Cla02g01159 Cam02g1235 Cec02g1244 Cco02g1284 Clacu02g1216 Cmu02g1185 Cre02g1496 . Csa02g01382 . Cme11g00388
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009905 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 4 1 1 33