Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0221 ATGGACCAACTAATTCGACGCGACGCTCGCATTCAGAACCCACCTGCTCCTTCCATCGAGCTTTCTGGGCATTCAAATCGCTCTCAATCCACCTCCAGGTCTGAAGGGGAGTTGAAGGATTCTGCAGCTGCTAGAAGAGTTCAGAAGGCTGACAGAGAGAAACTAAGAAGAGACCGATTGAATGAACAATTTGTCGAGCTGGGAAATATTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCATCTTAATGGATACAATTCAATTGCTGAAGGATTTAGCGTCTCAAGTTAACAAACTGAACACTGAGCATGCAACATTAACAGAAGAATCACGTGAGCTGGCCCAGGAAAAGAATGATCTAAGAGAAGAGAAGGCGTTACTCAAATCTGATATTGAGAATCTCAATGCTCAGTATCAGCAAAATCTCAGGGCTGCATACCCTTGGGCTGCCATGGATAACTCGGTTGTCGTGGCTCCTGCTCCCTTTCCATATCCGGTGCCAATGCAAATGCCGCCAGGGCCATTTCCATTGTATCCATCCTTGCAACCTTATACATTCTTCGGAAATCAAAATCCTGGGGTAATTGCAAACCCGTGTTCCCCCTTCGTCCCATACATGCCTCCCAATTCATTGATTGAGCAGCAGTCCTCCCGAAATGTGCCGCCTTTCGTTCATCCAGACAATCAGTCTCATAACTTGAACAAGCAAGATACCGGGAGCAAGTCTTCGGGTGAAAGCAAGATTGAGAAAACTGTAGATTCTAATGAAGTTGCAACATACCTGGAACTGAAAACTCCTGGATCTTCCACAGATCAGCATCTTTGCAGGATTCATCGTTTGAACAAACAAGCGGTAAGAACGGGAAGGAAAATAGTCTATCAGAAGTAG 894 45.19 MDQLIRRDARIQNPPAPSIELSGHSNRSQSTSRSEGELKDSAAARRVQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATILMDTIQLLKDLASQVNKLNTEHATLTEESRELAQEKNDLREEKALLKSDIENLNAQYQQNLRAAYPWAAMDNSVVVAPAPFPYPVPMQMPPGPFPLYPSLQPYTFFGNQNPGVIANPCSPFVPYMPPNSLIEQQSSRNVPPFVHPDNQSHNLNKQDTGSKSSGESKIEKTVDSNEVATYLELKTPGSSTDQHLCRIHRLNKQAVRTGRKIVYQK 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1761469 1766515 + Sed0015022.2 Sed01g0221 699525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0221 297 Gene3D - 42 127 IPR036638 GO:0046983(InterPro)
Sed01g0221 297 MobiDBLite consensus disorder prediction 215 253 - -
Sed01g0221 297 SMART finulus 50 100 IPR011598 GO:0046983(InterPro)
Sed01g0221 297 MobiDBLite consensus disorder prediction 215 243 - -
Sed01g0221 297 CDD bHLH_AtILR3_like 49 123 - -
Sed01g0221 297 Coils Coil 84 139 - -
Sed01g0221 297 MobiDBLite consensus disorder prediction 38 54 - -
Sed01g0221 297 Pfam Helix-loop-helix DNA-binding domain 45 94 IPR011598 GO:0046983(InterPro)
Sed01g0221 297 MobiDBLite consensus disorder prediction 18 37 - -
Sed01g0221 297 PANTHER TRANSCRIPTION FACTOR BHLH121 16 289 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Sed01g0221 297 MobiDBLite consensus disorder prediction 1 54 - -
Sed01g0221 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 112 IPR036638 GO:0046983(InterPro)
Sed01g0221 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0221 Sed-Chr1:1761469 Sed14g1194 Sed-Chr14:21229329 6.80E-57 dispersed
Sed01g0220 Sed-Chr1:1761469 Sed01g0221 Sed-Chr1:1761469 5.10E-145 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37094 PF00010 HLH 8.00E-09 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0221 - - - 0.0