Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0228 ATGGAGGTCGCAGCCTTCTCTTCCAAGCCTCAGCCACTGGCGCTGAACCCATGTCTCCCTCTCAATTCCTCTTCCTCCTTCTCCTACGCTCGCCTCCGCTTCGTCCGCCGACAGTTCCTCGGCTCCGGCCACAATCTCCGCCCGCCGGACGCTTTGCGCTTTCGCCGGAGGTCCTTAGGCCGCGGCCTTATTGTTCAGTCTCCCCGGTGTATCTTCCGCTCTGCGTTCAGTTCTAATCCGGTTCTCATCGTTGTTGCCGTGGTTACCTTCTCCGCCGTCTCGTTTTTCTATATGAACTTGAATCGGAGGAAGAAGAATGCGGCTGAGCGCTCCCAATCTCCAAAGCTTGCATTATCCCAACTAGGTAGAGGCATCAACTGGTCTGTCGATGGTCAGATAATGGGCTTTAGGGATCACCATGGTGATGTGTTAGAGAAGAACATAGCTGTAAAGGATAGAACTGAAGAGAGAAGTTATTCCGGGGAAGAAGAGACTGTTCTGCAGCTTCAAACATCAGTTCTGTCACACAAGGCCAGCATCACCGAAACATTGCAGCCATCCGTTTCGGAAGATACCACTTCTAAGGATAGCGATTCTCTGTTTTCGGATGAAAGTAAAGCAGGAGATTCTTCTATTCTTTATGATATCTTTAAATCTGGCGTCCTGCAGCCTCTTATTTTTGCCAACAACATGACCGACTTGCAGCTAAACACGTCCGATGTCAAATCGCACTCTGACTTGCACATTGTGGTTGATACAACTGAGCTTCCACCTGTTCCACATGTTCCCGATCCTTTATATAGTGTATATAATCAAGTGACTCAACATTTCAAAGCTGATGATGAGCTTCTAAAAGAGGAAAAGTTAGCCAGTTCCAATGTTCTAATTGAAGAACTGGCTAGAGAAGATATTTACATGTTCTATGAAGATACAAAGTCAAGTAGTCAAACAACAACTTCTTCTCGTACTTCTCATCTATACAATGAAAACATTTCTCCAGTGATGATTAACGTTGACTCAAGAAAAGCAGCAGCATTAGTGTCAGAGGGTTCTCTTCAAATTTCAGGATATGTTGAAAGAAAAGTACCTGTCGAAAGATATAAGGAAGGTTCTTCAGAGGAAAGAAAAAAATCTGGTGGCGGCAACAATATTTTAAGACATGGGGAAAGAAAAGAACCCGGTCGGCATAAAGGGAAAGTTGTGAATGGGTTACCTTATCCTAATGGGAAGCATGTTCATAACAAAAATCTTCATGTAGATCAATTTAAATCGTACAATCAATGTCTGAGAGGTGGAAGGTTGCATGAGTGTATCAAAATACTTCAAGATATGGAAAGAGAAGGCTTATTGGATATGAATAAGATCTATCATGGAAAGTTTTTCAATATTTGCAAGAGTCAAAAGGCTGTTCAGGAAGCTTTTCAGTACACCAGACTTATTACAAACCCCACATTGAGTACATTTAATATGCTCATGTCTGTATGTGCAAGTTCTCAAGATTCTGATAGAGCCTTTCAAGTTGTGCGGCTTGTCCAGGAGGCTGGAATGAATGCAGATTGCAAATTATACACTACTTTAATCTCAACATGTGGGAAGAGTGGAAAAGTGGATACAATGTTTGAAGTATTCCACCGAATGGTTAATGCTGGAGTAGAACCTAATGTTCGCACATACGGGGCACTTATTGATGGTTGTGCAAGAGCAGCTCAAGTGCCCAAGGCATTTGGCGTGTACGGAATAATGAGGTCAAAGAACGTGAAGCCAGACAGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAGTCAGGAGCCGTGGATCGTGCTTTCGATGTGCTGGCAGAAATGGGTGCCGAGCTACATCCTATAGAGCCTGATCATGTTACCATTGGGGCTTTGATCAAGGCATGTGCAAATGCTGCCCAGGTTGATCGGGCGAGAGAAGTGTATAAGATGATTCATGATTATAAGATTAAGGGCACACCAGAGGTTTACACCATTGCTGTTAATTGTTGTTGTCAATCTGGTGACTGGGACTTTGCTTCTCGTGTATATCAAGATATGACCAGGAATGGAGTACAACCTGATGAGATTTTTCTCAGTGCATTAATAGATGTTGCAGGCCATGCTGGTAAGCTGGATGCTGCCTTTGAAGTCTTAGAAGAAGCCAAGACACTAGGGATACGTGTTGGCATTGTATCATATAGTTCGTTGATGGGTGCCTGTTGCAATGCTAAAAATTGGCAGAAGGCGACAGAACTGTATGAGGAACTCAAGTCTATGAAACTGAAGCTAACTGTTTCAACCTTCAACGCATTAATAACTGCACTGTGTGACGGGGAACAACTAAAAATGGCTATGGATATTCTGGCAGAAATGAAGGGATTAGGACTCTACCCAAACAACATTACATACTCCGTACTTATGGGAGCAAGTGAAAGGAATGATGATTTAGAAATTGCCCTCATGCTTCTCTCTCAAGCCAAAGAGGATGGGATTGTGCCAACCTTAATTATGTATAGGTGCATAATTGGCATGTGCTTACGAAGAATTGCAAAGCCCTCTGCCCTTGATAGACCACTCTTGTCTCTTGACACTAGACAGCCTCAAGTCGATAGTAAGTGGACAGCACATGCCTTAATGGTTTACCGGGAAATAATTGAAGCCGGAATTGTTCCAAGTACCGAAGTTTTATCCCAAGTCTTGGGGTGCTTGCAGATTCCTCATGATCCCGTCTTAAAAAGTAGACTCATAGAAAATATTGTAATAAGTGCTGACACATCAAGATCTTCAAATCTCTGCTCCTTGATAGATGGCTTTGGTGAATATGACCCTCGTGCCTTTTCACTGTTGGAGGAAGCTGCTTCACTTGGAGTTGCTCCATTTGTATCCCTTAAAGGAAGTCCTATTATTATAGATGTCAAGGAGTTGCAGATTCATACAGCTGAGGTTTACCTCTTGACAGTTTTGAAGGGTCTCAAACATCGGCTTGCTGCTGGTTCAAGGTTACCAAACATACTGATCTTACTGTCTGTTGAGACGACGCAAATTGTCTCTTCCAAGGGGGAGATGACCATTAACCTTGCAGGAAGGGTTGGACAAACAGTTGCGGCATTGTTGAGAAGACTTGGACTTCGCTACCAGGGAAATGAATCAAGCGGAAAAATCAGAATCAATGGCTTAACCTTGAGAAGGTGGTTACAACCAAAACAGTCTGATTCTCTAAGTATAAAACCAGGAGAGTTCAGCCCGTTTCAGTCGCGTTTAAGAAAAGGAATAAGCCATCAGCAGCGTGATATTCGCTCTGGGAATCTATCATTGGATTAA 3327 43.31 MEVAAFSSKPQPLALNPCLPLNSSSSFSYARLRFVRRQFLGSGHNLRPPDALRFRRRSLGRGLIVQSPRCIFRSAFSSNPVLIVVAVVTFSAVSFFYMNLNRRKKNAAERSQSPKLALSQLGRGINWSVDGQIMGFRDHHGDVLEKNIAVKDRTEERSYSGEEETVLQLQTSVLSHKASITETLQPSVSEDTTSKDSDSLFSDESKAGDSSILYDIFKSGVLQPLIFANNMTDLQLNTSDVKSHSDLHIVVDTTELPPVPHVPDPLYSVYNQVTQHFKADDELLKEEKLASSNVLIEELAREDIYMFYEDTKSSSQTTTSSRTSHLYNENISPVMINVDSRKAAALVSEGSLQISGYVERKVPVERYKEGSSEERKKSGGGNNILRHGERKEPGRHKGKVVNGLPYPNGKHVHNKNLHVDQFKSYNQCLRGGRLHECIKILQDMEREGLLDMNKIYHGKFFNICKSQKAVQEAFQYTRLITNPTLSTFNMLMSVCASSQDSDRAFQVVRLVQEAGMNADCKLYTTLISTCGKSGKVDTMFEVFHRMVNAGVEPNVRTYGALIDGCARAAQVPKAFGVYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHVTIGALIKACANAAQVDRAREVYKMIHDYKIKGTPEVYTIAVNCCCQSGDWDFASRVYQDMTRNGVQPDEIFLSALIDVAGHAGKLDAAFEVLEEAKTLGIRVGIVSYSSLMGACCNAKNWQKATELYEELKSMKLKLTVSTFNALITALCDGEQLKMAMDILAEMKGLGLYPNNITYSVLMGASERNDDLEIALMLLSQAKEDGIVPTLIMYRCIIGMCLRRIAKPSALDRPLLSLDTRQPQVDSKWTAHALMVYREIIEAGIVPSTEVLSQVLGCLQIPHDPVLKSRLIENIVISADTSRSSNLCSLIDGFGEYDPRAFSLLEEAASLGVAPFVSLKGSPIIIDVKELQIHTAEVYLLTVLKGLKHRLAAGSRLPNILILLSVETTQIVSSKGEMTINLAGRVGQTVAALLRRLGLRYQGNESSGKIRINGLTLRRWLQPKQSDSLSIKPGEFSPFQSRLRKGISHQQRDIRSGNLSLD 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1804049 1813951 + Sed0010933.1 Sed01g0228 699532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0228 1108 Pfam Pentacotripeptide-repeat region of PRORP 562 725 IPR033443 -
Sed01g0228 1108 Pfam PPR repeat family 766 810 IPR002885 -
Sed01g0228 1108 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 661 695 IPR002885 -
Sed01g0228 1108 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 433 564 - -
Sed01g0228 1108 NCBIfam pentatricopeptide repeat 557 589 IPR002885 -
Sed01g0228 1108 NCBIfam pentatricopeptide repeat 522 555 IPR002885 -
Sed01g0228 1108 NCBIfam pentatricopeptide repeat 664 697 IPR002885 -
Sed01g0228 1108 NCBIfam pentatricopeptide repeat 733 766 IPR002885 -
Sed01g0228 1108 NCBIfam pentatricopeptide repeat 769 801 IPR002885 -
Sed01g0228 1108 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 619 IPR002885 -
Sed01g0228 1108 MobiDBLite consensus disorder prediction 366 398 - -
Sed01g0228 1108 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 554 588 IPR002885 -
Sed01g0228 1108 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 711 858 - -
Sed01g0228 1108 Gene3D Tetratricopeptide repeat domain 794 856 IPR011990 GO:0005515(InterPro)
Sed01g0228 1108 Gene3D Tetratricopeptide repeat domain 726 793 IPR011990 GO:0005515(InterPro)
Sed01g0228 1108 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 5 1107 IPR053303 -
Sed01g0228 1108 MobiDBLite consensus disorder prediction 183 205 - -
Sed01g0228 1108 Gene3D Tetratricopeptide repeat domain 570 725 IPR011990 GO:0005515(InterPro)
Sed01g0228 1108 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 801 835 IPR002885 -
Sed01g0228 1108 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Sed01g0228 1108 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 766 800 IPR002885 -
Sed01g0228 1108 Gene3D Tetratricopeptide repeat domain 449 569 IPR011990 GO:0005515(InterPro)
Sed01g0228 1108 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 619 710 - -
Sed01g0228 1108 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 731 765 IPR002885 -
Sed01g0228 1108 Pfam PPR repeat 733 761 IPR002885 -
Sed01g0228 1108 Pfam PPR repeat 523 551 IPR002885 -
Sed01g0228 1108 Pfam PPR repeat 428 449 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0228 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0228 Sed-Chr1:1804049 Sed05g3578 Sed-Chr5:44290154 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35