Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0233 ATGGGAATCAGACTACTTTCACTTCTTCTTAATGCTAAACAGATTGTAAAAATGCAGACTGTTTCTTCAAGAAGCCAGTGTGGTGTCCCCAAGGGTCATATTGCAGTCTATGTCGGAGAGACCGAAAGGAAGCGGTTTGTAGTTCCGGTATCATACTTGAATCACCCTTCTTTTGCAGCTCTGCTAAAGAGAGCTGAAGAAGAATTTGGATTTAAACATCCAACAGGAGGACTGACAATTCCTTGCGGAGAAGATGCCTTTATCAACATTACTTCTAGGCTGCATACTTCTTGA 294 41.84 MGIRLLSLLLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAALLKRAEEEFGFKHPTGGLTIPCGEDAFINITSRLHTS 97
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1839242 1839706 + Sed0013275.1 Sed01g0233 699537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0233 97 Pfam Auxin responsive protein 13 93 IPR003676 GO:0009733(InterPro)
Sed01g0233 97 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 14 94 IPR003676 GO:0009733(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0233 K14488 - - csv:101210944 157.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0233 Sed-Chr1:1839242 Sed05g3575 Sed-Chr5:44283418 2.40E-43 dispersed
Sed01g0232 Sed-Chr1:1838324 Sed01g0233 Sed-Chr1:1839242 4.90E-33 tandem
Sed01g0233 Sed-Chr1:1839242 Sed01g0234 Sed-Chr1:1842015 3.40E-34 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g84 . . . . . Bpe12g00106 . . . Cmo11g01717 Cma02g00337 Cma20g00777 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00456 Csa07g00071 . . . . Bda15g01051 . . . . . Sed01g0233 . Cmo20g00776 Cma11g01404 . . . . . Bhi10g01905 Tan05g1204 . . . . . . . . . . . . Lsi11g01173 Csa02g01345 . Cme11g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000045 7 14 1 1 5 16 0 0 13 4 12 13 24 19 19 31 17 1 0 16 18 3 0 3 14 20 13 24 12 19 339