Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0247 ATGGGAATCCGGTTAGAGAGTGGTATTCTGTCAAAGAAAGTTCTCAAGAGGTGCATTTCGAGCGAAAGAAAGACAATCTCAACATCATTGGAGGTTCCAAAAGGATTCTTTGCAGTTTATGTAGGAGAGAGTCTTAAGAAGCGCTTTGTGGTTCCAATATCATACTTAAAACACCCTTCATTTCAGGCTTTGCTTAAAAGAGCTGAAGAAGAATTTGGATTTGGTCACCCAATGGGCAGCCTAACTATTCCATGTAGAGAAGATACTTTCATTGAAATCACTTCTAGGCTTGGCTAG 297 40.07 MGIRLESGILSKKVLKRCISSERKTISTSLEVPKGFFAVYVGESLKKRFVVPISYLKHPSFQALLKRAEEEFGFGHPMGSLTIPCREDTFIEITSRLG 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1899837 1900395 + Sed0023803.1 Sed01g0247 699551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0247 98 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 12 97 IPR003676 GO:0009733(InterPro)
Sed01g0247 98 Pfam Auxin responsive protein 20 96 IPR003676 GO:0009733(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0247 K14488 - - rcu:107261581 136.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0247 Sed-Chr1:1899837 Sed05g2272 Sed-Chr5:35302516 3.70E-28 dispersed
Sed10g0986 Sed-Chr10:8353443 Sed01g0247 Sed-Chr1:1899837 6.60E-18 dispersed
Sed01g0247 Sed-Chr1:1899837 Sed01g0249 Sed-Chr1:1915121 1.90E-20 proximal
Sed01g0246 Sed-Chr1:1895992 Sed01g0247 Sed-Chr1:1899837 6.50E-25 tandem
Sed01g0247 Sed-Chr1:1899837 Sed05g2260 Sed-Chr5:35257242 1.60E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g81 . . . . . Bpe12g00104 . . Cmo19g00728 Cmo11g01713 . . . . . . . . . . . . . . Cla02g00458 Cam02g0466 Cec02g0465 . Clacu02g0468 Cmu02g0462 Cre02g0796 . . . . . Csa07g00063 . . . . Bda15g01052 . Bpe15g00833 . . . Sed01g0247 . . Cma11g01407 Cma19g00717 . . . . Bhi10g01907 Tan05g1206 Cmetu11g0253 . . . . . . . . . . . Lsi11g01166 Csa02g01342 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213