Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0250 ATGTTAAAATTGAAGGGCAGTTTGGTAAACCAGGGCTTATTAAAGCTCCTAGAAATCCCAAACGAAACAGCCCTGCAAAACGCACTTCGCCAATTGCCATCATTCTCTCTGCAACGTTCACCGGAAAAGAAACAAAAAATGTCAGCGGAGACGGCGAAAAGCAACAAGATCCGGCGCATTGTTCGGCTCCGTCAACTGCTACAACTCTGGCGCAAGAAGGCACACCCATCGTCCTTCCGAGCACCGCCGTCCGACGTCCCCGCCGGCCACATCGCCGTCTGCGTCGGCAGCGGCTGCCGGCGATTCATCGTCCGCGCAACCTTCCTCAACCATCCGATCTTCCGGAAGCTGCTCTCGCAGGCCGAGGAGGAGTACGGCTTCGCTACGCCAGGTCCTCTCGCGCTTCCATGCGACGAATCCGTCTTCGAAGAGGTTCTCCGAGTCATCGCCCGCTCCGATTTGAATAACTCGTCTCGAAATCCGGAGTTTCAGAGGCGATGCGATGAAGATTTCAGACTGAACCTGGAGGTTTTAGGCGAATCGAGACCTCTGCTGTATGGAATCGCCGATTCTAAATCCGTTTGTTGA 588 54.42 MLKLKGSLVNQGLLKLLEIPNETALQNALRQLPSFSLQRSPEKKQKMSAETAKSNKIRRIVRLRQLLQLWRKKAHPSSFRAPPSDVPAGHIAVCVGSGCRRFIVRATFLNHPIFRKLLSQAEEEYGFATPGPLALPCDESVFEEVLRVIARSDLNNSSRNPEFQRRCDEDFRLNLEVLGESRPLLYGIADSKSVC 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1946938 1947895 - Sed0008108.1 Sed01g0250 699554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0250 195 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 63 149 IPR003676 GO:0009733(InterPro)
Sed01g0250 195 Pfam Auxin responsive protein 63 149 IPR003676 GO:0009733(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0250 K14488 - - csv:101222974 218.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0250 Sed-Chr1:1946938 Sed01g2499 Sed-Chr1:18707600 6.00E-46 dispersed
Sed01g0250 Sed-Chr1:1946938 Sed04g3891 Sed-Chr4:47093519 1.70E-40 wgd
Sed01g0250 Sed-Chr1:1946938 Sed05g2274 Sed-Chr5:35337147 7.90E-46 wgd
Sed01g0250 Sed-Chr1:1946938 Sed05g3574 Sed-Chr5:44281884 3.30E-12 wgd
Sed01g0250 Sed-Chr1:1946938 Sed05g3562 Sed-Chr5:44196717 2.40E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g62 . . . . . Bpe12g00100 . . Cmo19g00716 . Cma02g00356 Cma20g00800 Car02g00223 Car20g00684 Sed05g2274 . . Bhi05g01769 Tan02g0737 Cmetu01g1255 . Hepe02g0456 . . Cla02g00471 Cam02g0478 Cec02g0479 Cco02g0485 Clacu02g0482 Cmu02g0477 Cre02g0810 . . . . Lsi10g00427 Csa07g00056 Chy11g00325 Cme01g01314 . . Bda15g01059 Bda14g00585 Bpe15g00835 . Bma03g00579 Bma08g00775 Sed01g0250 Cmo02g00358 Cmo20g00808 . Cma19g00707 . Car19g00545 Cpe16g00283 Cpe05g01300 Bhi10g01927 Tan05g1225 Cmetu11g1460 . Hepe08g0962 . . . . . . . . . Lsi11g01154 Csa02g01321 Chy01g00725 Cme11g00450
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000731 6 3 1 4 4 3 5 2 2 3 3 3 5 3 3 5 3 0 4 3 3 3 3 3 3 3 3 6 3 1 96