Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0261 ATGGACGCCATTAGAAAGCAGGCCATCAAGCTCCGTGAACAGGTCGCTCGCCAACAGCAGGCTGTCCTTAAACAGTTTGGTGCCGGAGGATATGGAGGTTCAGATAACATTATTACGGATGAGGCAGAACTTCACCAACATCAAAAACTAGAAAAATTGTATATATCAACTCGTGCTGGAAAGCACTTTCAAAGGGATATTGTACGAGGAGTAGAGGGCTATATTGTTACTAGTTCAAAACAAGTTGAAATAGGAACAAAGTTGTCAGAAGATAGCAGGAAATATGGATCTGAAAATACTTGTACCAGTGGAAACACATTATCAAAAGCTGCATTAAGTTATGGACGTGCACGAGCTCAGATGGAGAAAGAGCGTGGAAACATGTTGAAGGCTCTTGGTACTCAGGTTGCAGAGCCATTGAGAGCAATGGTTATGGGTGCTCCTTTGGAGGATGCTCGACATCTTGCTCAACGTTATGACAGAATGCGACAAGAAGCTGAAGCTCAGGCCATTGAAGTTTTCAAACGCCAGGCAAGAGTCCGGGAAACGCCAGGCAATGCTGAGAATGCGATAAAGTTGGAAGCGTCGGAAGCAAAATTGCAAGATCTAAAGTCAAATATGGCAACAATGGGAAAGGAAGCTGCAGCAGCCATGGCTGCTGTTGAAGCTCAACAACAGAGGCTAACTCTCCAGCGACTCATTGCCATGGTTGAAGCAGAACGAGCTTATCATCAGAGAGTTCTTCAGATACTCGATCAGCTAGAAGGCGAGATGGTGATGGAGCGGCAGCGAATCGAAGCTCCTCCTACTTCCCCTCCTCCTGGTTCAAGTGTTGACAATAGCATGCCACCACCTCCATTATATGAAGAAGTCAATGGTGTATATGCTTCTCAAGCATATAATGGCTTTACAGATTCCATGGGTTACTTTTTGGGAGAGGTTTTGCATCCCTACCAAGCCGAGTCAGAAGTCGAGCTCAATTTAACCATTGGCGACTACGTCGTTGTCAGAAAGGTGTCGAACAACGGTTGGGCGGAGGGAGAGTGCAAAGGTAGAGCAGGCTGGTTCCCGTTTGGATACGTAGAAAGAAGAGAACGGGTACTTGCAAGTAAGGTTGCCGAGGTATTTTGA 1131 46.07 MDAIRKQAIKLREQVARQQQAVLKQFGAGGYGGSDNIITDEAELHQHQKLEKLYISTRAGKHFQRDIVRGVEGYIVTSSKQVEIGTKLSEDSRKYGSENTCTSGNTLSKAALSYGRARAQMEKERGNMLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVFKRQARVRETPGNAENAIKLEASEAKLQDLKSNMATMGKEAAAAMAAVEAQQQRLTLQRLIAMVEAERAYHQRVLQILDQLEGEMVMERQRIEAPPTSPPPGSSVDNSMPPPPLYEEVNGVYASQAYNGFTDSMGYFLGEVLHPYQAESEVELNLTIGDYVVVRKVSNNGWAEGECKGRAGWFPFGYVERRERVLASKVAEVF 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2026917 2034189 + Sed0022270.1 Sed01g0261 699565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0261 376 Coils Coil 186 213 - -
Sed01g0261 376 Gene3D Arfaptin homology (AH) domain/BAR domain 45 262 IPR027267 -
Sed01g0261 376 SUPERFAMILY BAR/IMD domain-like 47 258 IPR027267 -
Sed01g0261 376 Gene3D SH3 Domains 312 364 - -
Sed01g0261 376 MobiDBLite consensus disorder prediction 265 284 - -
Sed01g0261 376 SMART SH3_2 310 365 IPR001452 GO:0005515(InterPro)
Sed01g0261 376 Pfam Variant SH3 domain 314 362 IPR001452 GO:0005515(InterPro)
Sed01g0261 376 Coils Coil 149 169 - -
Sed01g0261 376 Coils Coil 220 240 - -
Sed01g0261 376 PANTHER SH3 DOMAIN-CONTAINING 13 363 IPR050384 -
Sed01g0261 376 Coils Coil 1 21 - -
Sed01g0261 376 ProSiteProfiles Src homology 3 (SH3) domain profile. 307 366 IPR001452 GO:0005515(InterPro)
Sed01g0261 376 MobiDBLite consensus disorder prediction 267 281 - -
Sed01g0261 376 SUPERFAMILY SH3-domain 269 364 IPR036028 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0261 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0261 Sed-Chr1:2026917 Sed05g3546 Sed-Chr5:44047663 3.60E-164 dispersed
Sed01g0261 Sed-Chr1:2026917 Sed05g3545 Sed-Chr5:44047663 1.90E-181 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g26 . Blo15g00668 Bda06g00963 Bda08g00957 . . Bma05g00428 . . . Cma02g00365 . Car02g00233 . . . . . . . . . . . . . . . . . . . . . Cone10ag1099 Lsi10g00414 . Chy11g00338 . . . . . . Bpe05g00321 . . Sed01g0261 Cmo02g00369 . . . . . . Cpe05g01290 Bhi10g01943 Tan05g1240 Cmetu11g1701 . Hepe08g0977 . . . . . . . . . . Csa02g01306 . Cme11g00167
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007122 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 2 37