Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0277 ATGGCTACATACTATAGTTCGAATAATGAAAAGGATGCTACTCCTATCCTCTATTCAAGGGGAGCTTTGATCAATTCGTATGAAGAAACATCAGTTCTTCCCAGGAATATGATGATGCATGTAAGTTCTGGAACGTACATGGATTCAATGCCTTCACAGGGGCAAATTGGTGTTGGTCAGATAATGTCGGTCGGAGCAACAGGAACCACTCAACAACATCAAGAGTTTTTGTCTAATCTTGGTGGTCCGCGAATTCCCGAGCATGATTTCAATACGTGGAGAGAAGAAAGGAGTGAAATGCTTGGTGCGAACTCGATGCGTGGCACTAGCAATGTTCTTCATGGTGGACAGAATTTGAAGGGTCAGGGGTTATCCCTTACTCTCAGCACACAAATCCCATCTGCAATCCAAATGCCTTCAATCTCATACAGAAATTCGGATATGGGCTTCACTTCATTCTTGAGTCCTAATCCGACGAATTCAGACGAGGATGGCTGCGGAAATGGTGCTTCTAGAGACGAACAGCTGAGAAATGGAGAAAACTTGCCGCCTAATTTTCAAGAATTAGCAAAGGGTGAATTATCTCAATACAATTTGTCTACTATTGCAAGAACTATGCCGAATTCGAAGTACCTCAAGGCAACACAACAACTGCTTGATGAAGTTGTTAATGTTAGGAAAGCTTTGAAGCGACCTAATAATGAGAGAAACCAGAGTTCACATGAGCATGAAACTCGAAGTGCAAAGAATGGTGATGCAGGAACCAGAAATGAAAGTTCGATGCTCACGGCGAGGGGAGCATCTTCAAACCCTCAAGAAACTGGAAGCAATTCAATATGTGAACTCTCACATGCTGAAAAGCAAGATTTTCAGAACAAGTTGACAAAGCTTTTATACATGTTAGATGAGGTTGATAGAAGGTACAACCAATATTATCATCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCAGGATGTGGTGCATCTAAGCCATATACAGCACTTGCACTCCAGACTATATCCCGTCATTTTCGGTGCTTGCGGGATGCAATATCCGGTCAAGTTCGAGCTACCCACGAAAGCTTGGGAGAGCATGAAAGCTCAGGAAATGACAGAGGAGTTGGAATCACCCGTCTCCGATACGTCGATCGGCAGTTAAGGCAACAAAGGGCTATTCAGCAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCGGTTCTCCGCGCTTGGCTGTTTGAGCATTTCCTTCACCCGTATCCAAAGGACTCCGATAAGATCATGCTGGCAAGGCAGACAGGCTTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCTCGTGTCCGACTTTGGAAACCTATGGTAGAGGAAATGTACAAGGAAGAGGCAGGCAGTACAGAAATGGACTCTATATCATCATCTGAAAATGCTGGCAAAGCAACAAAAGGAGATAACAGGACCTTTGAGGATGATAAAGAGGAGGATCTGCAACTAAGTGCAAGTTCAACAGCTACCGAAAGATGTAGCGCCGGAGATATGACCAACTTACAATCCGATCAAGCCTCTAATCTTGGAAACTCAGGTTCCACCAGACTAGCTAGTTTCCAAAATGGCGTGCACATTGAAGCACAAAACGAGCTGGTAAATTCGAGGGAGGAGCTAAGGCATAATGTAAATAACTCTAATTTTTTCCCTGATGCAATTGTCCACTCTCAGGCAGGGAGTGACAGGTTTATGGCTGCCTATCACATGTCTGAATTGGGAAGGTTCGGGTCGGTTAGCGGGGTATCGCTTACGCTGGGTCTGCAACATTGTGAGGGTGGTGGTGGATTACCTATTCCTGCTGGGACACACCATGGTTTTACAGCCATGAGAGAAGACGAAATGTACAATCCCACGACATCTTCTCTTGGGGAAACAGTGCATTTTGAATGCGTAAATGCCGGTAATTCGCAACCGAGGTTCGGCCCTTCTCATCTTTATCATGATTTTGTTGTGTAA 2037 44.53 MATYYSSNNEKDATPILYSRGALINSYEETSVLPRNMMMHVSSGTYMDSMPSQGQIGVGQIMSVGATGTTQQHQEFLSNLGGPRIPEHDFNTWREERSEMLGANSMRGTSNVLHGGQNLKGQGLSLTLSTQIPSAIQMPSISYRNSDMGFTSFLSPNPTNSDEDGCGNGASRDEQLRNGENLPPNFQELAKGELSQYNLSTIARTMPNSKYLKATQQLLDEVVNVRKALKRPNNERNQSSHEHETRSAKNGDAGTRNESSMLTARGASSNPQETGSNSICELSHAEKQDFQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAISGQVRATHESLGEHESSGNDRGVGITRLRYVDRQLRQQRAIQQLGMIQQHAWRPQRGLPENSVSVLRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEAGSTEMDSISSSENAGKATKGDNRTFEDDKEEDLQLSASSTATERCSAGDMTNLQSDQASNLGNSGSTRLASFQNGVHIEAQNELVNSREELRHNVNNSNFFPDAIVHSQAGSDRFMAAYHMSELGRFGSVSGVSLTLGLQHCEGGGGLPIPAGTHHGFTAMREDEMYNPTTSSLGETVHFECVNAGNSQPRFGPSHLYHDFVV 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2137265 2143217 + Sed0001561.1 Sed01g0277 699581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0277 678 CDD homeodomain 405 466 IPR001356 GO:0003677(InterPro)
Sed01g0277 678 MobiDBLite consensus disorder prediction 152 166 - -
Sed01g0277 678 MobiDBLite consensus disorder prediction 474 522 - -
Sed01g0277 678 Pfam Associated with HOX 207 354 IPR006563 -
Sed01g0277 678 SUPERFAMILY Homeodomain-like 406 473 IPR009057 -
Sed01g0277 678 ProSiteProfiles 'Homeobox' domain profile. 402 465 IPR001356 GO:0003677(InterPro)
Sed01g0277 678 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 147 499 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed01g0277 678 FunFam BEL1-like homeodomain protein 4 408 470 - -
Sed01g0277 678 Pfam Homeobox KN domain 422 461 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g0277 678 MobiDBLite consensus disorder prediction 230 251 - -
Sed01g0277 678 MobiDBLite consensus disorder prediction 478 493 - -
Sed01g0277 678 MobiDBLite consensus disorder prediction 494 509 - -
Sed01g0277 678 Gene3D - 400 479 - -
Sed01g0277 678 SMART prehox3 200 355 IPR006563 -
Sed01g0277 678 SMART HOX_1 405 469 IPR001356 GO:0003677(InterPro)
Sed01g0277 678 MobiDBLite consensus disorder prediction 230 258 - -
Sed01g0277 678 MobiDBLite consensus disorder prediction 152 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0277 Sed-Chr1:2137265 Sed07g0787 Sed-Chr7:5833243 2.40E-86 dispersed
Sed01g0277 Sed-Chr1:2137265 Sed05g3534 Sed-Chr5:43959941 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37097 PF07526 POX 9.00E-50 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0277 - - - 0.0