Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0278 ATGGACGCCACCATTGACTTCTCTCGCAATAGCTACGCCACCACCCCGAATGGACTGCATCACGAGAGACGTAAGAGACTAAAATTATCTACTGATGGAAAAGATTTCCCTGGCACTGCTACCTTTTCTTCTAAAAAATGTGACACGCCGAGACAAAACAAAATGAAGAACTCAGGAAACATAGTTGATTACTCTGATCCATTTTCCATTAATAATTTGGTGGATGGTTTGGATTGTGGTCAGTTTGGAAGTGTCACTAAAGAGATAGATGCTCTTGTTTCCCGTAAGATGCAAGTTCTAAGTCCCTACATAGCCGTGTATCCTACTCTGTCAAGTATGTTATTTGATCTGGGGAGAAGTAAAGAGTGTACAGAGGAAATGAATCATCAAGCTTCCCAATTGGTTCACAATCTCATTGATTTGGAGGATGATTCTTCCATTGACGTTCGTTCCAAAACTGTTGAGAAATCAAGATTGCCTATTGTTATAATTGATTCTGATGAGGAAGAAAGCGAAGATCAGAGGCGCATAATACATCCCTTTCAAGAGGTTGCTCTGCCTAGACCTCCTGGACAAAGTTTCTTCAAGGAAATAGTGCAGAAAGCGAGGAAGGACATAGTGGTAGGTCAGCAGAAAGCGAGAAACGCTTTGCTTCTGGATCACCAGGCTCCAAATGGAGTGGAAGCCACTCCTATTGTTCAAAGTGAAACTATAAGTAAGAAAGACAAAGGTGTTTACGTTGGTGTAGAAGAGGATGAGGATGATGATGAGGTCGGCAAACAGGCTAACAATGAAGATGATGGTCTTGAAGATATTTGGAACGATATGCAAATGGCATTAGAATGTTCCAAGGACTTGGATGTCGCTGTAGATTCATCATCTAATCAGAAAACTACAGATGCTGTGGACTGTGATCATTCTTTTATCTTGAAGGAGGATCTTGGTTATGTCTGTCGCATTTGTGGGGTTATTGACAGAGGAATTGAGACCATTTTCGAGTTTCAGTACACCAAGGGTAACAGGAGCACAAGAACATACACGTCTGAATCTCGTCACAAAGATTCGGGTGACATTGTTGGAGTTAAAATTTCAGAAGATGATTTGGCAGTTACTGAAATTTCTGCACACCCTAGGCATATGAAGCAAATGAAACCTCATCAAGTTGAGGGTTTCAATTTCCTTCTAAGCAACTTGGTGTCTGACAATCCAGGAGGCTGCATTTTGGCCCACGCTCCTGGATCTGGAAAGACATTCATGATAATCAGTTTCATGCAAAGTTTTTTAGCCAAGTATCCACAGGCTAGACCATTGGTTGTGCTTCCCAAAGGAATCTTGGCTACATGGAAAAAGGAGTTTCAGATTTGGCAAGTGGAAGATATTCCACTCTACGACTTCTATTCCGTTAAAGCAGATAATAGGGCTCAACAGCTGGCAGTATTGAACCAATGGGTCGAGCACAAGAGTATTCTGTTCTTAGGATACAAACAATTTTCCACAATTGTCTGCAATGTTGAAACCAGTGCTTCATCAACTCAATGTCAAAATATATTGCTCAAGGTTCCTACGATTCTTATCCTAGATGAGGGCCATACTCCAAGAAATGAGAACACTGATACTTTGCAAACTCTTGCCAAAGTCAGAACTCCACGAAAAGTGGTTCTTTCAGGAACCCTATATCAAAACCACGTGAAAGAGGTATTCAATATAGTTAATCTTGTTCGACCGAAGTTCATGAGATCAGAAACTTCTCGACCTATTGTCAAGCGCATCATGGCAAGAGTAGATATCCCTGGTGCGAGGAAGCAGTTCAAATCGGGCGTGGATTCTGCCTTTTATGATTTGGTGGAGCATACCCTTCAAAAAGATTCAGATTTCAGGAGAAAAGTGAGTGTCATCCATGATTTACGTGAGATGACCAGCAAGATTCTGCATTATTATAAAGGAGATTTTCTCGATGAGCTCCCTGGACTGGTTGACTTCACTGTGGTGCTGAATCTCTCCTCTAAACAGAAGCATGAAGGAGAAAAGGTTAAAAAGTTCAACAGGAAGTTCAAAATGAGCTCTGTCGGCAGTGCTGTTTATTTACACCCAAAGTTGAATGTTTTCTCTGAGAATGCTGTTATAACCGATGACAAATTAGATGACCTCATTGATAAGATGGACATTAAAGATGGAGTGAAGGCAAAATTCTTTCTTAACATGCTGAATTTGTGCGCTACTACTGGGGAGAAGCTGCTGGTTTTCAGTCAATACCTCCTTCCATTGAAATTCTTGGAGAGATTGGTTGTGCAGAAGAAGGGTTGGAGTCCAGGAAAAGAGACCTTTATGATAACCGGTGAAACAACTTCTGAGCAACGGGAATGGTCGATGGAACGCTTCAACAACTCACCCGATGCAAGAGTCTTCTTTGGCTCCATTAAGGCCTGCGGAGAGGGCATATCTCTTGTAGGCGCATCACGTATCATTATTTTGGATGTTCATCTTAATCCTTCAGTGACCCGCCAAGCAGTTGGTCGTGCATTCCGTCCCGGTCAAACAAAGAAAGTATTTGCTTATAGGTTGGTGGCTGGTGACTCACCTGAAGAGACAGATCATAGCAGTTGCTTCAAGAAGGAATTGATTGCAAAGATGTGGTTTGAGTGGAACGAGTACTGTGGCTATCATGACGTGGAAGTGGAGACTGTTGATGCAAAAGAGTGTGGCGACAATTTTCTTGAAACCCCACTTCTAAATCAAGATGTTAGAGTTCTGTACAGAAGGTAG 2763 41.95 MDATIDFSRNSYATTPNGLHHERRKRLKLSTDGKDFPGTATFSSKKCDTPRQNKMKNSGNIVDYSDPFSINNLVDGLDCGQFGSVTKEIDALVSRKMQVLSPYIAVYPTLSSMLFDLGRSKECTEEMNHQASQLVHNLIDLEDDSSIDVRSKTVEKSRLPIVIIDSDEEESEDQRRIIHPFQEVALPRPPGQSFFKEIVQKARKDIVVGQQKARNALLLDHQAPNGVEATPIVQSETISKKDKGVYVGVEEDEDDDEVGKQANNEDDGLEDIWNDMQMALECSKDLDVAVDSSSNQKTTDAVDCDHSFILKEDLGYVCRICGVIDRGIETIFEFQYTKGNRSTRTYTSESRHKDSGDIVGVKISEDDLAVTEISAHPRHMKQMKPHQVEGFNFLLSNLVSDNPGGCILAHAPGSGKTFMIISFMQSFLAKYPQARPLVVLPKGILATWKKEFQIWQVEDIPLYDFYSVKADNRAQQLAVLNQWVEHKSILFLGYKQFSTIVCNVETSASSTQCQNILLKVPTILILDEGHTPRNENTDTLQTLAKVRTPRKVVLSGTLYQNHVKEVFNIVNLVRPKFMRSETSRPIVKRIMARVDIPGARKQFKSGVDSAFYDLVEHTLQKDSDFRRKVSVIHDLREMTSKILHYYKGDFLDELPGLVDFTVVLNLSSKQKHEGEKVKKFNRKFKMSSVGSAVYLHPKLNVFSENAVITDDKLDDLIDKMDIKDGVKAKFFLNMLNLCATTGEKLLVFSQYLLPLKFLERLVVQKKGWSPGKETFMITGETTSEQREWSMERFNNSPDARVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAVGRAFRPGQTKKVFAYRLVAGDSPEETDHSSCFKKELIAKMWFEWNEYCGYHDVEVETVDAKECGDNFLETPLLNQDVRVLYRR 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2145144 2152172 - Sed0009304.1 Sed01g0278 699582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0278 920 SMART helicmild6 756 844 IPR001650 -
Sed01g0278 920 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 733 898 IPR001650 -
Sed01g0278 920 Gene3D - 655 901 IPR027417 -
Sed01g0278 920 Gene3D - 352 604 IPR038718 -
Sed01g0278 920 CDD SF2_C_SNF 727 855 IPR049730 -
Sed01g0278 920 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 48 920 IPR044567 GO:0080188(InterPro)
Sed01g0278 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 582 IPR027417 -
Sed01g0278 920 SMART ultradead3 379 587 IPR014001 -
Sed01g0278 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 882 IPR027417 -
Sed01g0278 920 MobiDBLite consensus disorder prediction 1 17 - -
Sed01g0278 920 MobiDBLite consensus disorder prediction 1 25 - -
Sed01g0278 920 Pfam Helicase conserved C-terminal domain 731 844 IPR001650 -
Sed01g0278 920 Pfam SNF2-related domain 386 672 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Sed01g0278 920 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 397 576 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0278 K10875 - - csv:101207775 1550.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0278 Sed-Chr1:2145144 Sed05g3532 Sed-Chr5:43951253 0.00E+00 dispersed
Sed01g0278 Sed-Chr1:2145144 Sed05g3531 Sed-Chr5:43951253 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1 . . . . Bpe07g00526 . . . . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 . Cpe04g00116 . . . . . . . . Cla02g00501 Cam02g0511 Cec02g0511 Cco02g0519 Clacu02g0513 Cmu02g0509 Cre02g0842 . . . . . . . Cme01g01368 . . . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . . . Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . . Chy01g00763 .
Vvi3g3 . Blo15g00679 Bda06g00991 . . . . Bma12g00550 . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 Sed03g1723 . . Bhi05g01788 Tan02g2021 Cmetu03g0999 . . . . . . . . . . . Cone12ag1169 Cone8ag1217 . . Lsi10g00400 . Chy11g00351 . . Blo13g00542 . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . Csa02g01291 . Cme11g00153
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004368 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 2 4 1 3 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37098 PF00176 SNF2_N 7.90E-20 CL0023 Sed TR