Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0281 ATGGCTTCTCTGCAGCAGTTATCCGTCATTAAGGGTTCCAAGGTGCTCATGGTTGGAGCGGGAGGAATCGGCTGCGAGCTTTTGAAGACTCTGGCTCTCTCGGGGTTTCAGGACATTCATATTATTGACATGGACACCATAGAAGTCAGCAACTTAAACCGGCAATTTTTATTCCGAAAGTCCCATGTAGGGCAGTCAAAGGCTAAGGTTGCTCGAGATGCCGTCTTAAGATTTAGACCTCATGTTAGCATTACCTCATATCATGCAAATGTGAAAAATCAAGAATTTGATGTTGATTTCTTTAAGCAATTTAATGTTGTTTTGAATGGACTTGACAACTTAGATGCGAGGCGACATGTGAATCGTCTATGCTTGGCAGCTGATGTTCCCTTAGTTGAAAGTGGGACCACTGGATTCCTTGGACAGGTCACAGTCCATGTCAAGGGTAGAACAGAGTGCTATGAGTGCCAGCCAAAACCAGCCCCAAAAACATATCCTGTCTGTACTATTACTAGTACTCCGTCAAAGTTTGTTCACTGTATCGTGTGGGCAAAGGATCTACTTTTTGCGAAGTTATTTGGAGATAAAAATCAAGAAAATGATCTAAATGTGCGTTCAAGTGACCCAGCAAGTTCATCAGACCATGCTGAAGATGTATTCGACCATAAAAAAGATGAAACTATTGAGCAGTATGGAAGAAGAGTATTTGATCATGTATTTGGGTACAATATTGAAGTAGCTTTATCGAACGAAGAAACTTGGAAAAATCGCAATAAACCTAGGCCTATTTATAGTAGGGATATCCTTCCTGAGGAACCAACTAAACAGAATGGAAACATGGACAAGAACTGTGCCACTGATGACCAATCCTTAATTTCTGCCATGACATCCTTAGGCATGAAAAATCCCCAGGAGATATGGAGTCTAATGGAAAACTCGAGAATCTTCATGGAGGCTATTAAACTTTTTTTCACGAAAAGGGAAAAGGATGTTGGGAACTTGACTTTTGATAAAGATGATCAGTTAGCTGTGGAGTTTGTCACTGCTGCTGCAAACATTAGGGCTGAATCTTTTGGTATTCCTATGCATGGCCTTTTCGAATCTAAAGGTATTGCTGGTAATATTGTGCACGCCGTTGCAACGACCAATGCTATTATTGCTGGGTTGATTGTGATCGAGGCAATTAAAGTGCTGCAAAACAATGTAAACAATTACAGGATGACGTATTGTCTCGAACATCCTACGAGGAAGATGCTACTCATGCCAGTGGAACCTTTTGAACCTAATAAATCCTGCTATGTTTGTTCTGAGACACCGTTATCGCTCGAGATAAATACTCATCATGCGAAGTTGCGGGATTTTGTTGAGAAGATAGTCAAGGCCAAGCTTGGTATGAACTTTCCACTCATTATGCATGGAGCTTCCCTTCTTTATGAAGTTGGCGATGATCTTGATGAACACATGGTGGCAAATTACGCTGCAAACCTTGAGAAGGTGTGA 1500 41.33 MASLQQLSVIKGSKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRKSHVGQSKAKVARDAVLRFRPHVSITSYHANVKNQEFDVDFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGRTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDPASSSDHAEDVFDHKKDETIEQYGRRVFDHVFGYNIEVALSNEETWKNRNKPRPIYSRDILPEEPTKQNGNMDKNCATDDQSLISAMTSLGMKNPQEIWSLMENSRIFMEAIKLFFTKREKDVGNLTFDKDDQLAVEFVTAAANIRAESFGIPMHGLFESKGIAGNIVHAVATTNAIIAGLIVIEAIKVLQNNVNNYRMTYCLEHPTRKMLLMPVEPFEPNKSCYVCSETPLSLEINTHHAKLRDFVEKIVKAKLGMNFPLIMHGASLLYEVGDDLDEHMVANYAANLEKV 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2155271 2162956 + Sed0019695.3 Sed01g0281 699585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0281 499 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 163 374 IPR023318 -
Sed01g0281 499 MobiDBLite consensus disorder prediction 200 221 - -
Sed01g0281 499 Pfam ThiF family 7 432 IPR000594 -
Sed01g0281 499 FunFam SUMO-activating enzyme subunit 377 410 - -
Sed01g0281 499 Pfam Ubiquitin-activating enzyme, SCCH domain 326 367 IPR019572 -
Sed01g0281 499 FunFam SUMO-activating enzyme subunit 163 374 - -
Sed01g0281 499 PIRSF SUMO_E1B 2 499 IPR030661 GO:0016925(InterPro)|GO:0019948(InterPro)
Sed01g0281 499 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 8 484 IPR035985 GO:0008641(InterPro)
Sed01g0281 499 CDD Uba2_SUMO 14 435 - -
Sed01g0281 499 FunFam SUMO-activating enzyme subunit 2 9 185 - -
Sed01g0281 499 FunFam SUMO-activating enzyme subunit 2 1 108 - -
Sed01g0281 499 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 8 496 IPR045886 GO:0005737(PANTHER)|GO:0016925(PANTHER)|GO:0019948(PANTHER)|GO:0031510(PANTHER)|GO:0032446(PANTHER)
Sed01g0281 499 Gene3D - 2 108 IPR042449 -
Sed01g0281 499 Gene3D - 436 499 - -
Sed01g0281 499 Pfam Ubiquitin/SUMO-activating enzyme ubiquitin-like domain 442 498 IPR028077 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0281 K10685 - - csv:101205378 955.281
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0279 Sed-Chr1:2155271 Sed01g0281 Sed-Chr1:2155271 5.90E-292 dispersed
Sed01g0281 Sed-Chr1:2155271 Sed05g3530 Sed-Chr5:43943712 4.30E-274 dispersed
Sed01g0280 Sed-Chr1:2155271 Sed01g0281 Sed-Chr1:2155271 5.60E-268 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g336 Blo02g00838 Blo15g00710 . Bda08g00946 Bpe07g00415 . Bma05g00435 Bma12g00496 . . Cma02g00376 Cma20g00825 Car02g00243 Car20g00711 . . . . . . . . . . . . . . . . . . . . . Lsi10g00399 . Chy11g00352 . . . . . . . . . Sed01g0281 Cmo02g00383 Cmo20g00836 . . . . Cpe16g00263 Cpe05g01278 Bhi10g01969 Tan05g1264 Cmetu11g1045 . Hepe08g0992 . . . . . . . . . . Csa02g01289 . Cme11g00143
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004157 1 1 2 4 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 1 44