Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0284 ATGGGATCTGCTTGTTGTGTTGCTGCTAGGGACAAGACTATAGTAAGTGGATCTGGAAGTGAAACTTTATGTAGGAATGTAAGGTATTCGCCTAGTTGGAGCTTTCGATGGGATAATCGTGGACGGGTAGCAGGCGAAGAGACTTCGATAAATTGGTTTTCTGATAGTATTAGCCGCAATGATAGAGCGGAACTGAAGTCTGAGTCAGCATATGCATCAGAGGATGGAAGTCCACTTGATCATCTCCGTAGATGTACATGGCAAAAGTCCCCACCACCAGAAGGCACGACTAATAATTTGAGAACTTCTACTTCAGGTCAATCAAATTCAAGAAATTTGTCAACAGACGTAAGTTTAGAACAGGTGAAGGAGGATATAGAATCTCCAACGGCTTCCTACAAGTCTCATGCAAAATTGTCACTTTCATTACCTTCAACTTCATCTTTGCCAACATCTCCTTTGTCATCACAGAGTTATCTGCCTCCATCCAATTCATCTATAACAAGATGCTCTCATCAATCCCCAGGACATCAGCTATTGCGTCAAGTGTCCGAGAGCCGAGTCCGAGCACTAAAATCTCCAAGTAGCTATTTAGGCTCTGAAGATAGACATAGGCTTCCTTCTTGGAGCAATGAATCAGTCCGGGACTCGCATGGAGGATCTTCAGATTGTTGGTCTATGCATGCTTTCTCTGAACTCATGGCCACTTCTCATAGAGAAAGGTGGTCTTTTGATAGTGACTCGTTTGGTTTTAACGGTGAGAAAATAGCCAGATCTAGTAGTCAAATTTCGAATTCCTCAGTTGATTTGCAAACTTGTGGAGTTTGCTCGAAGCTGTTGACTGAGAAATCCTCATGGAGTAGCCAAAGGATCATTGCCAACGAACTTTCTGTTGCTGCTGTACTAACCTGTGGCCACGTGTATCATGCCGATTGCTTGGAGAGTATGACACCTGAGATTTACAAGTACGACCCCGCTTGTCCTGTTTGTACATTCGGGGAGAAGCATACGCAGAAGCTATCCGAAAAGGCGCTTAAAGCTGAAATGAACTGGAAGAGTCAATATAAGAGATCCAAAAACTGCATTGCCGATCAGGATTTCGATGGTGATTATGCCTCCAACAATCCTTTCAAAAACAATCCGCGTCTTGAAAGGGGCTCGAAAATGTCTGCCAGTTCTAGTTCGAGAAGGTCCTCAGGAAAGCCGTTCTTGAAGCGACATTTCTCCTTCGGCTCAAAGGGATCTTCAAGAGTGTTGTCTGATAATCACTCCATAAGAAGGAAAGGTTTCTTCTGGGCGAAATCTAGCAAAATATGA 1317 43.66 MGSACCVAARDKTIVSGSGSETLCRNVRYSPSWSFRWDNRGRVAGEETSINWFSDSISRNDRAELKSESAYASEDGSPLDHLRRCTWQKSPPPEGTTNNLRTSTSGQSNSRNLSTDVSLEQVKEDIESPTASYKSHAKLSLSLPSTSSLPTSPLSSQSYLPPSNSSITRCSHQSPGHQLLRQVSESRVRALKSPSSYLGSEDRHRLPSWSNESVRDSHGGSSDCWSMHAFSELMATSHRERWSFDSDSFGFNGEKIARSSSQISNSSVDLQTCGVCSKLLTEKSSWSSQRIIANELSVAAVLTCGHVYHADCLESMTPEIYKYDPACPVCTFGEKHTQKLSEKALKAEMNWKSQYKRSKNCIADQDFDGDYASNNPFKNNPRLERGSKMSASSSSRRSSGKPFLKRHFSFGSKGSSRVLSDNHSIRRKGFFWAKSSKI 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2173225 2177744 - Sed0002025.1 Sed01g0284 699588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0284 438 MobiDBLite consensus disorder prediction 133 176 - -
Sed01g0284 438 SMART ring_2 273 330 IPR001841 -
Sed01g0284 438 MobiDBLite consensus disorder prediction 191 215 - -
Sed01g0284 438 MobiDBLite consensus disorder prediction 68 176 - -
Sed01g0284 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 332 IPR013083 -
Sed01g0284 438 MobiDBLite consensus disorder prediction 374 408 - -
Sed01g0284 438 MobiDBLite consensus disorder prediction 90 117 - -
Sed01g0284 438 MobiDBLite consensus disorder prediction 374 399 - -
Sed01g0284 438 SUPERFAMILY RING/U-box 272 331 - -
Sed01g0284 438 CDD RING-H2 273 330 - -
Sed01g0284 438 PANTHER EXPRESSED PROTEIN 1 336 - -
Sed01g0284 438 ProSiteProfiles Zinc finger RING-type profile. 273 331 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0284 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0284 Sed-Chr1:2173225 Sed04g3916 Sed-Chr4:47290855 6.10E-131 dispersed
Sed01g0284 Sed-Chr1:2173225 Sed04g3915 Sed-Chr4:47290855 6.10E-131 wgd
Sed01g0284 Sed-Chr1:2173225 Sed05g2310 Sed-Chr5:35567154 2.00E-134 wgd
Sed01g0284 Sed-Chr1:2173225 Sed05g3528 Sed-Chr5:43937668 9.20E-212 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g344 . . . . Bpe07g00416 . . Bma12g00499 . . Cma02g00378 Cma20g00829 Car02g00245 Car20g00714 Sed05g2310 . . Bhi05g01247 Tan02g0782 Cmetu01g1358 . . . . . . . . . . . . . . . Lsi10g00395 . Chy11g00356 . Blo04g00522 . Bda15g00059 . . . . . Sed01g0284 Cmo02g00384 . . . . . Cpe16g00260 Cpe05g01277 Bhi10g01975 Tan05g1268 Cmetu11g0620 . Hepe08g0995 . . . . . . . . . . Csa02g01285 . Cme11g00139
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001394 4 6 2 3 3 2 3 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 2 2 5 5 1 74