Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0288 ATGTCTGGACCCTTGGATCGATTCGCCAGACCATGCTTTGAGGGGTTCTCTGGTAGTGATGAAAGAAAAGAAAGGAAATCTGATTTTGAAAACTCAGAGGATGAAAGGAGGACTAGAATTGGGTCTATAAAGATGAAAGCACTAAATGCATCTTCCAAATTTAAACACTCTCTCAAAAAGAAGAGCAGTAGGAGAAAAAGTGATGGTCGGGTGAGTTCTGTTGCTATTGAGGATATCAGGGATGTTGAGGAGCTGCAGGCTGTTGATGCATTTCGTCAAGCACTAATAATGGAAGAACTGCTGCCAGAAAAACATGATGACTATCACATGATGTTGAGGTTTTTAAAAGCTAGGAAATTTGATATCGAGAAAGCTAAGCATATGTGGGCTGATATGCTTCAGTGGAGGAAGGAGTTTGGCGTTGACACAATAAGTGAAGACTTTGAATTTTTAGAGAAAAATGAAGTTCTGAGATACTATCCTCATGGTTATCATGGGGTGGATAAAGAAGGAAGACCTGTTTACATTGAAAGATTGGGGAAAGTGGATCCAAACAAACTTATGCAAGTAACAACTATGGATCGATATATAAGGTACCACGTCCAAGAGTTTGAGAAGAGTTTTGCTATCAAGTTTCCAGCCTGTTCTATTGCTGCAAAGAGGCACATAGATTCAAGCACCACAATCTTAGATGTTCAAGGCGTGGGCCTTAAGAATTTCACCAAGTCTGCTAGAGAACTCATCACGCGGCTGCAGAAAGTTGATGGTGACAATTACCCAGAAACTCTCAACCAAATGTACATTATCAATGCTGGTCCTGGATTCCGGATGCTGTGGAATACTGTGAAGTCTTTCCTTGACCCCCGAACAACATCTAAAATTCATGTTCTCGGAAACAAGTACCAAAACAAATTACTTGAAATAATTGATTCCAGTGAATTGCCGGAATTTCTGGGCGGAAGCTGTACCTGTGCAGATTTGGGGGGATGTCTTCGTTCAGACAAGGGGCCTTGGAGAAACCCAGAAATTCTAAAGATGATTCTTAATGGTGAAGCACGATGGGCCAGACAGGTTGTAAAAGTTCTAAATAGTGAAGGGAAGGTTGTTGCTTATGCTAAGCCGCATTACCCAATGGTGAAAGGTAGTGACACATCCACTGCCGAGTCAGGATCTGAAGCTGAAGACATTGCTTCTCCTAAAGCAATGAAGAGCTATTCTCATCTTCGGTTGACCCCTGTTCGGGAAGAAGCAAAAGTTGGTGGGAAAGGAGCTTTTGCTGCTAGCTTCTCTGGGTATGATGAATATGTTCCCATGGTTGACAAAGCTGTTGATGCTGGGTGGAAGAATGAAGTTTCACTACAACGACCTAGTTCCTCCAAAGGGGTTTTCCCACTGCCTGGCACTCCGAAAGCACCAGAACCCCTTCATTCTCGAATGTTGTTACTATTCACAGGCTTCTTCATAGCCATTTTTTCTTTTCTCCGTTCACTGGCATGCCGGATAAGTGAGAAGATATTATTACCTATTGGTCGTGAAAACACTCCAGCATTGTCCCTTGATCAATCGGGCAGGAAGGAGAATCGCCATCCTTCACCAATTGCTAAATCTTCAGAAGCAGAACTCCTCTCTAATCTAATGAAGAGGCTGGGTGAGCTGGAGGAGAAGGTCGATACGCTCCAATCGAAACCATCCGAAATGCCATATGAGAAAGAAGAACTGTTGAATGCCGCCGTCTGCCGTGTGGATGCCTTGGAAGCAGAGCTAATAGCTACCAAGAAGGCTTTGCATGAAGCGTTGATGAGGCAAGAAGAGCTGCTTGCTTACATTGATGGCCAAGAGGAAGCAAAGTTGCGGAAAAAGAAATTTTGCTGGTAA 1875 43.31 MSGPLDRFARPCFEGFSGSDERKERKSDFENSEDERRTRIGSIKMKALNASSKFKHSLKKKSSRRKSDGRVSSVAIEDIRDVEELQAVDAFRQALIMEELLPEKHDDYHMMLRFLKARKFDIEKAKHMWADMLQWRKEFGVDTISEDFEFLEKNEVLRYYPHGYHGVDKEGRPVYIERLGKVDPNKLMQVTTMDRYIRYHVQEFEKSFAIKFPACSIAAKRHIDSSTTILDVQGVGLKNFTKSARELITRLQKVDGDNYPETLNQMYIINAGPGFRMLWNTVKSFLDPRTTSKIHVLGNKYQNKLLEIIDSSELPEFLGGSCTCADLGGCLRSDKGPWRNPEILKMILNGEARWARQVVKVLNSEGKVVAYAKPHYPMVKGSDTSTAESGSEAEDIASPKAMKSYSHLRLTPVREEAKVGGKGAFAASFSGYDEYVPMVDKAVDAGWKNEVSLQRPSSSKGVFPLPGTPKAPEPLHSRMLLLFTGFFIAIFSFLRSLACRISEKILLPIGRENTPALSLDQSGRKENRHPSPIAKSSEAELLSNLMKRLGELEEKVDTLQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKALHEALMRQEELLAYIDGQEEAKLRKKKFCW 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2203344 2210068 + Sed0025967.1 Sed01g0288 699592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0288 624 CDD SEC14 153 320 IPR001251 -
Sed01g0288 624 Coils Coil 581 601 - -
Sed01g0288 624 SUPERFAMILY CRAL/TRIO N-terminal domain 82 148 IPR036273 -
Sed01g0288 624 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Sed01g0288 624 Coils Coil 535 562 - -
Sed01g0288 624 Gene3D - 140 351 IPR036865 -
Sed01g0288 624 Pfam CRAL/TRIO, N-terminal domain 102 131 IPR011074 -
Sed01g0288 624 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 20 613 IPR051026 -
Sed01g0288 624 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Sed01g0288 624 Pfam CRAL/TRIO domain 158 320 IPR001251 -
Sed01g0288 624 MobiDBLite consensus disorder prediction 1 42 - -
Sed01g0288 624 MobiDBLite consensus disorder prediction 16 42 - -
Sed01g0288 624 SUPERFAMILY CRAL/TRIO domain 155 345 IPR036865 -
Sed01g0288 624 SMART sec14_4 152 323 IPR001251 -
Sed01g0288 624 FunFam SEC14 cytosolic factor 140 352 - -
Sed01g0288 624 Gene3D - 41 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0288 K26544 - - csv:101208172 1099.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0288 Sed-Chr1:2203344 Sed05g3526 Sed-Chr5:43872309 0.00E+00 dispersed
Sed01g0288 Sed-Chr1:2203344 Sed01g0289 Sed-Chr1:2214312 3.50E-172 tandem
Sed04g1715 Sed-Chr4:31787233 Sed01g0288 Sed-Chr1:2203344 8.70E-90 transposed
Sed01g0288 Sed-Chr1:2203344 Sed05g3524 Sed-Chr5:43864457 8.90E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g350 . . . . . . . . . . Cma02g00383 Cma20g00834 Car02g00248 Car20g00720 . . . . . . . . . . . . . . . . . Cone12ag1162 Cone8ag1211 Cone3ag1175 Cone10ag0981 Lsi10g00391 . Chy11g00362 Cme01g01117 Blo04g00520 . . . . . . . Sed01g0288 Cmo02g00389 Cmo20g00842 . . . . Cpe16g00256 Cpe05g01274 Bhi10g01981 Tan05g1280 Cmetu11g2218 . Hepe08g0999 . . . . . . . . . . Csa02g01281 . Cme11g00135
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004434 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 43