Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0289 ATGTCCGACGCCACGTCGGAACCTCTCGACCGACAGATCAAAGGTGCCAACGAAGTTGAGATGTCGGAGGAAGAGAAGAAGACGAGGCTCGTGTCTTTTAAGCAGAGAGCGATCAATGCCTCGAACAAGTTCAGGCATTCGATGAAGAAGAAAGGTAGGAGAAACAGCAGTAGAGTGAAGTCGGTCTCGATCATAGACGAGATCGATACCGAGGAATTACAGGCAGTAGATGCCTTTCGCCAAGCTCTGATATTGGAAGAGCTTTTGCCTTCAAAACATGATGACCATCACATGATGCTAAGGTTCTTGAGGGCTAGAAAGTTTGACATTGAAAAGGCAAAACAGATGTGGACTGACATGCTTCAATGGAGAAAAGAGTTTGGAGCTGACACTATAATGGAGGAGTTTGAATTCAAGGAAATAGACGAAGTATTGAAGTACTATCCACAAGGGCACCATGGAATCGACAAAGACGGACGACCCGTGTACATCGAACGGCTTGGGCAAGTCGATTCCACCAAGCTCTTGGAAGTGACAACCATGGACAGATACGTCAAATATCACGTCCGAGAGTTCGAGAGGACCTTTGTCTTGAAGTTCCCAGCTTGCTCCATTGCAGCAAAGAAGCACATTGATCAGAGCACAACCATCTTGGATGTCCAAGGAGTGGGACTCAAAAACTTCAACAAATCTGCAAGAGAGCTCATCCAAAGGCTGCAAAAAGTTGATGGTGACAACTATCCAGAGACTTTGAACAGAATGTTCATCATCAATGCTGGATCTGGATTCAGGCTTCTGTGGAACACTGTTAAATCATTCCTTGACCCAAAAACCACTGCCAAAATCAATGTTCTTGGCAATAAATATCAGAGCAAGTTGCTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTTCTTGGAGGTTCTTGCACCTGTGCTGACAAGGGTGGATGCATGAGATCCGACAAGGGACCATGGAACGACCCAGAAATTGCCAAGATGGTTGAAAATGGGGAAGGAAAATGCAGAAGAAAATCACTGTCAAACATTGAAGAGAAGACCATTTCTGAAGAAGAAAACACAGGAACCAAGAACTCAGAAGCAGCTCCTGATGCAGCAACAGCAACAGCAGCAGCAGAATCATCCCCAAAGCAAGCAAAACTGTCCCCTGTTTTAGAAGAAATTCCAATGGCTAAAAAGAATGGTTGTGAGAATCAATATGAAAAGTTCATTCCTATGGTGGATAAAGCTGTGGATCCAAGTTGGGCAATTGCAGCTAATCAGGGATACACTTTATCCAAAGATCCATTTACAGGGCATGAAAACTACAAAGTCCCAGAAGGGTTCAGCAACCAAATAGTTGGAGGAATAATGGCTGTAGTAATGGGGATAGTGACCATGGTCAGGCTCACTAGAAACATGCCAAAGAAGCTCACAGAGGCAGCCATCTACAGCAACACTGTCTACTATGACGGTTCGATGGCCAGACATCCGGCGCTACCGCCCCCAGCCGCCGTGCCTCTTAGTGACTACATGACCATGATGAAGCGCATGGCCGAGCTCGAAGAGAGGGTCAATGTTCTCAACAATAAGCCCGCCGTCATGCCACCCGAAAAGGAGGAAATGCTCAACGTTGCTTTGGCCAAAGTTGAAGCCTTGGAACAAGATCTACAAGCAACCAAGAAGGCACTTGAGGATTCCCTTGCTCGAGAGGCAGAGATGGCCGACTACATCGAAAAGAAAAAGAAGAAGAAGAAGATGATCCCATTTCTCTGGTGA 1779 45.87 MSDATSEPLDRQIKGANEVEMSEEEKKTRLVSFKQRAINASNKFRHSMKKKGRRNSSRVKSVSIIDEIDTEELQAVDAFRQALILEELLPSKHDDHHMMLRFLRARKFDIEKAKQMWTDMLQWRKEFGADTIMEEFEFKEIDEVLKYYPQGHHGIDKDGRPVYIERLGQVDSTKLLEVTTMDRYVKYHVREFERTFVLKFPACSIAAKKHIDQSTTILDVQGVGLKNFNKSARELIQRLQKVDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTTAKINVLGNKYQSKLLEIIDASELPEFLGGSCTCADKGGCMRSDKGPWNDPEIAKMVENGEGKCRRKSLSNIEEKTISEEENTGTKNSEAAPDAATATAAAESSPKQAKLSPVLEEIPMAKKNGCENQYEKFIPMVDKAVDPSWAIAANQGYTLSKDPFTGHENYKVPEGFSNQIVGGIMAVVMGIVTMVRLTRNMPKKLTEAAIYSNTVYYDGSMARHPALPPPAAVPLSDYMTMMKRMAELEERVNVLNNKPAVMPPEKEEMLNVALAKVEALEQDLQATKKALEDSLAREAEMADYIEKKKKKKKMIPFLW 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2214312 2219598 - Sed0020449.1 Sed01g0289 699593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0289 592 MobiDBLite consensus disorder prediction 13 28 - -
Sed01g0289 592 CDD SEC14 141 308 IPR001251 -
Sed01g0289 592 SMART CRAL_TRIO_N_2 95 120 IPR011074 -
Sed01g0289 592 Pfam CRAL/TRIO, N-terminal domain 92 119 IPR011074 -
Sed01g0289 592 PRINTS Cellular retinaldehyde-binding protein signature 98 120 - -
Sed01g0289 592 PRINTS Cellular retinaldehyde-binding protein signature 267 286 - -
Sed01g0289 592 Coils Coil 543 570 - -
Sed01g0289 592 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 140 314 IPR001251 -
Sed01g0289 592 SMART sec14_4 140 311 IPR001251 -
Sed01g0289 592 SUPERFAMILY CRAL/TRIO domain 140 336 IPR036865 -
Sed01g0289 592 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 18 582 IPR051026 -
Sed01g0289 592 Gene3D - 47 127 - -
Sed01g0289 592 Coils Coil 511 531 - -
Sed01g0289 592 Gene3D - 128 339 IPR036865 -
Sed01g0289 592 SUPERFAMILY CRAL/TRIO N-terminal domain 64 135 IPR036273 -
Sed01g0289 592 Pfam CRAL/TRIO domain 146 308 IPR001251 -
Sed01g0289 592 MobiDBLite consensus disorder prediction 1 28 - -
Sed01g0289 592 FunFam SEC14 cytosolic factor 128 340 - -
Sed01g0289 592 MobiDBLite consensus disorder prediction 348 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0289 K26544 - - csv:101214906 962.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0289 Sed-Chr1:2214312 Sed05g3524 Sed-Chr5:43864457 3.80E-277 dispersed
Sed01g0288 Sed-Chr1:2203344 Sed01g0289 Sed-Chr1:2214312 3.50E-172 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g351 . . . . . . . . . . Cma02g00384 Cma20g00835 Car02g00249 Car20g00721 . . . . . . . . . . . . . . . . . Cone12ag1161 Cone8ag1210 Cone3ag1174 Cone10ag0980 Lsi10g00390 . Chy11g00363 . Blo04g00519 . . . . . . . Sed01g0289 Cmo02g00390 Cmo20g00843 . . . . Cpe16g00255 Cpe05g01273 Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa02g01280 . Cme11g00134
Vvi4g1029 . . . . . . . . . . Cma03g00721 Cma07g00466 Car03g00661 Car07g00413 . Cpe19g00824 Cpe10g00635 Bhi03g00922 . . . . . . Cla01g01939 Cam01g2027 Cec04g1687 Cco04g1751 Clacu01g2050 Cmu01g1926 Cre04g1600 . . . . Lsi01g00646 . . Cme08g00885 . . . . . . . . Sed01g0289 Cmo03g00748 Cmo07g00464 . Cma20g00834 . . . . Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa06g03279 Chy02g00615 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005364 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 2 40