Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0291 ATGGCTGGTGATTCTTTGACAAGCTCTAATGGCACTGGCAATGCAAATGCACCACCTGATCCACGGAGGACTTATCAAGTTGTTGTGGCTGCTACTGAAAATATGGGTATTGGTAAGAATGGGGAACTACCATGGAAGTTGCCTTCTGATCTCAAATTTTTCAGAAACATAACCACAACAACATCCGATCATGGTAAAAGGAATGCAGTTCTAATGGGTCGAAAAACATGGGAGTCTATTCCTCCTGAGCATCGACCCCTTCCTGGTCGTCTCAATGTTGTCCTGACTCGCTCTGGGAGTTTTGACATTGCCACTGTTGAAAATGTCATAATATGTGGTAGTTTAACGTCTGCTTTGGAATTATTAGCAGCTTCTCCTTACTGTTTGTCTATAGAGAAAGTGTTTGTTATAGGTGGTGGTGAGATATTCAGGGAAGCTCTGAATGCCCCTGAGTGTGATGCTATCCACATTACTGAAATTGAGGCAAATGTTGAATGTGACACCTTCATTCCAGCTATCGACAAGTCTATGTTTCAGCCATGGTACTCATCCTTTCCTGTCGTAGAAAATAACTTTCGATATTCTTTCACTAGTTATGTCCGTGTGAGGAGCTCAATCGAACCACCCGATGATCGGAACGATGGTTTGATCTCTAACAACAAGCCTGATTCATCTAACTTTGAGGCTAAGAAGTTCTCTTTCCTACCGAAGGGGATTTTTGAGAGGCATGAAGAATACTTGTACTTAAAACTTGTTCAAGAAATCATTTCAGGTGGTACTCCCAAGGATGATAGAACAGGAACAGGTACTTTGTCAAGATTCGGTTGCCAGATGCGATACAACTTGCGCAAAACTTTTCCATTGCTTACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAACTTCTTTGGTTCATAAGTGGTTCAACCAATGCAAAGGTTCTTCAGGAGAAGGACATTCATATATGGGATGGCAATGCATCCAGAGATTACCTCGACAGTATTGGCTTGAAAGAAAGGGAGGAGGGCGACTTGGGACCTGTATACGGGTTCCAGTGGCGACATTTTGGTGCTAGGTATACTAACATGCATGCTGACTACACTGGTCAAGGATTTGATCAGTTGCTAGATGTAATTAACAAGATAAAAAATAATCCAGATGACCGGAGGATCATTCTTTCTGCTTGGAATCCATCTGATCTCAAACTGATGGCACTTCCTCCTTGTCACATGTTTGCCCAGTTTTATGTAGCGAACGGGGAGTTATCGTGTCAAATGTATCAGCGCTCCGCTGACATTGGCCTTGGTGTTCCATTTAATATTGCATCATATGCTCTTCTGACCTGCATGATTGCACATGTTTGTGGTCTTGCCCGAGGCGATTTCATACATGTGATTGGAGATGCTCATGTTTATCGTACTCATGTGAGGCCATTGCAGGAGCAGCTTCAGAAACTCCCCAAACCGTTCCCAATTTTGAAGATTAATCCCGAGAAGAAGGACATCGATTCTTTCGTGGCAGCTGATATTGAACTAACAGGTTATGACCCTCATGAGAAGATAGCAATGAAAATGGCAGTTTGA 1587 42.72 MAGDSLTSSNGTGNANAPPDPRRTYQVVVAATENMGIGKNGELPWKLPSDLKFFRNITTTTSDHGKRNAVLMGRKTWESIPPEHRPLPGRLNVVLTRSGSFDIATVENVIICGSLTSALELLAASPYCLSIEKVFVIGGGEIFREALNAPECDAIHITEIEANVECDTFIPAIDKSMFQPWYSSFPVVENNFRYSFTSYVRVRSSIEPPDDRNDGLISNNKPDSSNFEAKKFSFLPKGIFERHEEYLYLKLVQEIISGGTPKDDRTGTGTLSRFGCQMRYNLRKTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGNASRDYLDSIGLKEREEGDLGPVYGFQWRHFGARYTNMHADYTGQGFDQLLDVINKIKNNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADIGLGVPFNIASYALLTCMIAHVCGLARGDFIHVIGDAHVYRTHVRPLQEQLQKLPKPFPILKINPEKKDIDSFVAADIELTGYDPHEKIAMKMAV 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2233674 2240888 + Sed0015701.1 Sed01g0291 699595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0291 528 PIRSF DHFR-TS 9 528 IPR012262 GO:0004146(InterPro)|GO:0004799(InterPro)|GO:0006730(InterPro)
Sed01g0291 528 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 8 202 - -
Sed01g0291 528 CDD TS_Pyrimidine_HMase 248 481 IPR023451 -
Sed01g0291 528 PRINTS Thymidylate synthase family signature 286 307 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Sed01g0291 528 PRINTS Thymidylate synthase family signature 423 449 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Sed01g0291 528 PRINTS Thymidylate synthase family signature 461 478 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Sed01g0291 528 PRINTS Thymidylate synthase family signature 379 398 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Sed01g0291 528 PRINTS Thymidylate synthase family signature 405 420 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Sed01g0291 528 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 36 58 IPR017925 GO:0004146(InterPro)
Sed01g0291 528 FunFam Possible thymidylate synthase 239 528 - -
Sed01g0291 528 SUPERFAMILY Dihydrofolate reductase-like 22 201 IPR024072 -
Sed01g0291 528 PANTHER THYMIDYLATE SYNTHASE 1 47 528 IPR045097 GO:0004146(PANTHER)|GO:0004799(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006231(PANTHER)|GO:0016741(InterPro)
Sed01g0291 528 Gene3D Dihydrofolate Reductase, subunit A 8 203 IPR024072 -
Sed01g0291 528 Pfam Thymidylate synthase 248 528 IPR023451 -
Sed01g0291 528 MobiDBLite consensus disorder prediction 1 19 - -
Sed01g0291 528 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 233 528 IPR036926 -
Sed01g0291 528 ProSitePatterns Thymidylate synthase active site. 390 418 IPR020940 GO:0004799(InterPro)|GO:0006231(InterPro)
Sed01g0291 528 Pfam Dihydrofolate reductase 26 201 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Sed01g0291 528 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 24 201 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Sed01g0291 528 NCBIfam thymidylate synthase 248 528 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Sed01g0291 528 CDD DHFR 28 200 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Sed01g0291 528 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 238 528 IPR036926 -
Sed01g0291 528 MobiDBLite consensus disorder prediction 1 23 - -
Sed01g0291 528 Hamap Thymidylate synthase [thyA]. 245 528 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0291 K13998 - - csv:101208660 990.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0291 Sed-Chr1:2233674 Sed05g3522 Sed-Chr5:43852062 3.60E-287 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43