Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0294 ATGGATTCCTGCTTTATGTCCTTGAAATCTAATTCCCATCTGTGTCTGAATCGTGGTGAGAATGGATTTTATGGGGAAAAAGTTAGAGGAAGTTTTAACGATAATGCTTTGCTTAATCGCTTTGCAAAGAGCTTGAAATCTGAGAAGAAAGTTTTGAAGCTCACACCCAATGTTGCTTATGCTGTTGCCACACCAAATATTGCCAAGCAGCCTGAGAGCATTCAAGTGCCACCGGTTCACAAAGTAAAAGTGAACCCCAAAAATGTTGCTTCAATCATATTGGGAGGTGGTGCTGGGACTCATCTATTTCCCCTTACTAAAAGATCGGCAACGCCCGCGGTTCCAGTTGGAGGATGTTATAAGCTTATAGATATTCCAATGAGCAACTGCATTAACAGTGGAGTCAACAAAATTTTTGTGCTTACCCAGTTCAACTCTGCTTCTTTGAATCGTCATATTTCACGTACATACTTTGGAAATGGTGTCAACTTTGGAGACGGATATGTGGAGGTTCTTGCAGCCACTCAAACACCTGGGAAAACTGGTTCGCACTGGTTTCAAGGAACTGCAGATGCTGTGAGACAATTTATTTGGGTATTTGAGGATGCCAAGAACAGAAATGTCGAGAACATTTTAATTTTGGCAGGGGATCACATGTATAGAATGGATTACATGGACTTTGTGCAGAATCACATGGATACTAATGCTGATGTTTCAATCTCATGCGCACCCGTGGACGACAGTCGTGCACCAGACTACGGATTGGTGAAACTAGATAGGAGAGGGCGAATTATCGAGTTTTCTGAAAAGCCAAAGGCTGCCAATTTGAATGCAATGCGAGTAGATACAACTTCATTAGGTTTGTCTCGGGAGGAGGCGTTGAAGTCTCCTTACATCGCATCGATGGGAGTTTATGTTTTCAAAACGGATGTGCTGCTAAACCTTTTAAAGTGGAGATATCCTACTTCTAATGACTTTGGTTCTGAAATCATTCCTGCAGCTGTAAAGGAATACGATGTCCAAGCATTTATATTCAGAGACTATTGGGAAGACATTGGAACAATACAGACCTTCTTTGATGCAAACTTGGCCCTCACAGAAGAGTTTCCTAAGTTTGAGTTTTATGACCCGAAGACGCCTTTCTATACATCTCCTCGATTCTTACCACCAACCAAGATGGACAAATGTCAGATTATCGATGCGATAATCTCACATGGATGCTTTCTGAGAGAATGCAGTATCCAGCATTCAGTCGTCGGTGAACGGTCAAGACTAGACTACGGTGTTGAACTCATGGATACTATTATGATGGGCGCAGACAATTACCAAACTGAACTTGAAATTGCAGCTCTGATAGCAGATGGAGAAGTCCCTATTGGCATTGGAGAAAACACCAAAATCAGGTAA 1407 42.0 MDSCFMSLKSNSHLCLNRGENGFYGEKVRGSFNDNALLNRFAKSLKSEKKVLKLTPNVAYAVATPNIAKQPESIQVPPVHKVKVNPKNVASIILGGGAGTHLFPLTKRSATPAVPVGGCYKLIDIPMSNCINSGVNKIFVLTQFNSASLNRHISRTYFGNGVNFGDGYVEVLAATQTPGKTGSHWFQGTADAVRQFIWVFEDAKNRNVENILILAGDHMYRMDYMDFVQNHMDTNADVSISCAPVDDSRAPDYGLVKLDRRGRIIEFSEKPKAANLNAMRVDTTSLGLSREEALKSPYIASMGVYVFKTDVLLNLLKWRYPTSNDFGSEIIPAAVKEYDVQAFIFRDYWEDIGTIQTFFDANLALTEEFPKFEFYDPKTPFYTSPRFLPPTKMDKCQIIDAIISHGCFLRECSIQHSVVGERSRLDYGVELMDTIMMGADNYQTELEIAALIADGEVPIGIGENTKIR 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2260824 2266417 + Sed0003264.2 Sed01g0294 699598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0294 468 CDD ADP_Glucose_PP 92 352 - -
Sed01g0294 468 Gene3D Hexapeptide repeat proteins 387 468 - -
Sed01g0294 468 SUPERFAMILY Trimeric LpxA-like enzymes 383 468 IPR011004 -
Sed01g0294 468 NCBIfam glucose-1-phosphate adenylyltransferase 90 462 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
Sed01g0294 468 Pfam Nucleotidyl transferase 91 367 IPR005835 GO:0009058(InterPro)
Sed01g0294 468 SUPERFAMILY Nucleotide-diphospho-sugar transferases 86 410 IPR029044 -
Sed01g0294 468 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 44 468 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
Sed01g0294 468 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 185 193 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Sed01g0294 468 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 95 114 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Sed01g0294 468 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 300 310 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Sed01g0294 468 FunFam Glucose-1-phosphate adenylyltransferase 72 386 - -
Sed01g0294 468 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 78 386 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0294 K00975 - - csv:101208904 797.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0294 Sed-Chr1:2260824 Sed05g3609 Sed-Chr5:44448427 1.40E-237 dispersed
Sed01g0293 Sed-Chr1:2260824 Sed01g0294 Sed-Chr1:2260824 9.80E-277 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g359 Blo02g00807 . . . . . . . Cmo19g00849 . Cma02g00387 Cma20g00840 . Car20g00727 Sed05g2098 . Cpe15g00669 Bhi05g01515 Tan02g0519 Cmetu01g0280 Lac12g0419 Hepe02g0330 . . Cla02g00313 Cam02g0320 Cec02g0321 Cco02g0323 Clacu02g0312 Cmu02g0311 Cre02g0643 Cone12ag1278 Cone8ag1355 . Cone10ag0975 Lsi10g00383 Csa07g00231 Chy11g00368 . Blo04g00618 . . Bda14g00659 Bpe15g00765 . . . Sed01g0294 Cmo02g00394 Cmo20g00850 . Cma19g00833 . Car19g00646 Cpe16g00250 Cpe05g01269 Bhi10g01989 Tan05g1287 Cmetu11g1343 . Hepe08g1004 . . . . . . . . . Lsi11g01326 Csa02g01275 Chy01g00549 Cme11g00128
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001022 2 5 3 5 3 2 3 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 7 2 3 83