Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0297 ATGGGCAAGGTCAAGGGAAAGCATCGTTTGGACAAGTACTACCGTCTCGCCAAAGAGCACGGCTATCGCTCTCGTGCCTCATGGAAACTCGCTCAGCTCGATTCCAAGTACAACTTCCTCCGCTCCTCCCACGCCGTTCTCGACCTCTGCGCCGCCCCCGGCGGTTGGATGCAAGTCGCCGTCGAGCGGGTCCCCGTCGGCAGCCTCGTCGTCGGTGTCGATTTGGTCCCCATTGCGCCCGTCCGCGGCGCCATCGCTTTCGAGCAGGATATCACCAAGCCCGAGTGCAAGGCCAGGCTTAAGAAGGTTATGAACGACAAAGGGTTCCCTGCTTTCGATCTGATCTTGCACGATGGGTCGCCCAATGTTGGCGGTGCTTGGGCGCAAGAGGCTATGAGCCAGAATTCTTTGGTTATTGATTCTGTCAAGTTAGCTACTCAATTGCTTGCTCCGAAGGGTACTTTTGTTACCAAGGTTTTTAGGTCACAAGATTACAGTTCTGTCCTATATTGTCTCAAACAACTATTTGAAAAGGTTGAGGTCGACAAACCAGCCGCTAGTCGATCTGCATCTGCAGAAATATATGTTTTGGGTCTCAGGTATAAGGCTCCAGCAAAGATTGATCCTCGTCTTCTTGATGTGAAGCACCTATTTCAAGGATCTGTAGAACCCCAACGGAAGGTTGTGGATGTACTTAGAGGAACAAAACAAAAGAGACATCGTGATGGATATGAAGATGGAGATATGACTCTTCGGAAAGTGTCTTCTGCATCAAATTTCATCTGGTCAGATTCTCCTCTTGAGATCCTAGGAACTGTTACATCTATAACTTTTGACGATCCTGCTTGTTTACCGATCAAGGATCATGATTTAACAACTGAAGAGGTTAAGACACTTTGTGATGATTTAGGTGTCTTGGGAAAGCAGGATTTTAAGCATCTGCTGAAGTGGCGATTGCACATAAGGAAGGCCTTAGCTCCCAAGGAAAAGGCTACATCTATTCCTATTAAAGATGCTGAAAATGAGGTGAAGCAAGATGAAGATGAAAAATTACTAAATGAGATGGAAGAGCTGACTTATGCTATGGAACGTAAGAAGAAAAGGGAAAAAAAGCTTCTTGCAAAAAGGAGAGCTAAGGACAAAGCTAGGAAAGCAATGGGGAAGCAACTAGACGTCATGGAAGATGGTTATATTGATGATGAGTTATTTTCGCTTTCTAACATCAAGGGCAAGAATGATTTGAGGGTTGTTGATTCTACTGAATATGATGATGACAATGGTGGGATGGGAGAACAAGAAAATGACACAAAGGAGAAAAACTATGGGTCTTCAGCTAGTGATATTGACTCTGATGAACAGCGCAGAAGGTATGATGAACATATGGAGGAACTGTTAGATCAGGCTTATGAAAGCTTTGTTTCTAGGAAGGAAGGAAGTACAAAGCAGCGGAAACGTGCTAAAAAAGCCTTTTCTGATGATGCCGAGCTGCTCGAGGAGAATGAGAAAGGAGGTGATGGTTTTCAATCTGATTATGACTCTGATGAAAATATGGTAGATGAGGAAAGAAACCCATTGATGGTATCTCTTGATGATGGTGGAGTGCCAACTGAAGAAGAGATCTCAAACAAGTGGTTCAGTCAGGATATTTTTGCTGAAGCAGTAGAGGATGGAGATTTGAAGGAGTTGGATAGCGAAGATGATATGCAGATTGATAGACCAAAAGAAAAAACTGCGGTCTCCAAAGAAGCCAAGTCAAATATTTCAAAGAATGAAAGCAAGAAGTTGAAGGTTTCAACCAATGCAAGAGAGACCAAGGAAGCGGATGATGGATTCGAGATAGTCCCTGCCCCGGCTACAGATTCAAGCGACGATTCATCCTCCGATGAATCTGAGGATGATGACCCTGAGACGAAGGCCGAGATATTGGCATGTGCAAAGAAGATGCTGAGGAAAAAGCAAAGAGAGCAGATGATTGATGATGCTTACAACAAAAACATGTTCCACGATAAAAACTTGCCCAAGTGGTTTGTGGACGAGGAGCAGAGACACTGTCAGCGAATGAAGCCTGTAACCAGAGAGGAGTCTGCTGCAATGAAAGCACGATTCAAAGAAATTGATGCCCGTCCTGCTAAGAAGGTAGCTGAAGCTAAAGCACGAAAGAAGCGGGTTGCAATGAGGAAACTCGAAAAGGTTCGTAAGAAGGCAAATGTCATCTCAGACCAGGCAGATATATCGGATCGATCAAAGAGTAGGATGATCAATCAACTTTACAAAAAAGCAGTACCACAGAGACCCAAAAAGGAACTTGTGGTTGCAAAGAAAGGAGTTCAAGTCAGAGTTGGGAAGGGTAAAGTCTTGGTCGATCCACGTATGAAGAAGGATGCGAGGAAGCGTGGTATGAGCAAGCAGGGTAAAGGTTCGAAGAAGGGAAAGAACTCAAAGACGCCGAGAGGTAAGGAGGGATCTGGAAAGAACTCAAAGGCTCCGAGAAGTAAGGGGGGATCCGCGAAGGCTTCGGCGAAGAAGGGAAGAAAGGGAAACAAATGA 2547 45.15 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLAQLDSKYNFLRSSHAVLDLCAAPGGWMQVAVERVPVGSLVVGVDLVPIAPVRGAIAFEQDITKPECKARLKKVMNDKGFPAFDLILHDGSPNVGGAWAQEAMSQNSLVIDSVKLATQLLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYVLGLRYKAPAKIDPRLLDVKHLFQGSVEPQRKVVDVLRGTKQKRHRDGYEDGDMTLRKVSSASNFIWSDSPLEILGTVTSITFDDPACLPIKDHDLTTEEVKTLCDDLGVLGKQDFKHLLKWRLHIRKALAPKEKATSIPIKDAENEVKQDEDEKLLNEMEELTYAMERKKKREKKLLAKRRAKDKARKAMGKQLDVMEDGYIDDELFSLSNIKGKNDLRVVDSTEYDDDNGGMGEQENDTKEKNYGSSASDIDSDEQRRRYDEHMEELLDQAYESFVSRKEGSTKQRKRAKKAFSDDAELLEENEKGGDGFQSDYDSDENMVDEERNPLMVSLDDGGVPTEEEISNKWFSQDIFAEAVEDGDLKELDSEDDMQIDRPKEKTAVSKEAKSNISKNESKKLKVSTNARETKEADDGFEIVPAPATDSSDDSSSDESEDDDPETKAEILACAKKMLRKKQREQMIDDAYNKNMFHDKNLPKWFVDEEQRHCQRMKPVTREESAAMKARFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKKANVISDQADISDRSKSRMINQLYKKAVPQRPKKELVVAKKGVQVRVGKGKVLVDPRMKKDARKRGMSKQGKGSKKGKNSKTPRGKEGSGKNSKAPRSKGGSAKASAKKGRKGNK 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2274099 2280372 + Sed0008343.1 Sed01g0297 699601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0297 848 MobiDBLite consensus disorder prediction 565 610 - -
Sed01g0297 848 MobiDBLite consensus disorder prediction 419 520 - -
Sed01g0297 848 MobiDBLite consensus disorder prediction 775 848 - -
Sed01g0297 848 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 805 IPR028589 GO:0008649(InterPro)|GO:0031167(InterPro)
Sed01g0297 848 MobiDBLite consensus disorder prediction 430 509 - -
Sed01g0297 848 FunFam AdoMet-dependent rRNA methyltransferase SPB1 19 208 - -
Sed01g0297 848 Coils Coil 336 368 - -
Sed01g0297 848 MobiDBLite consensus disorder prediction 556 639 - -
Sed01g0297 848 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 6 211 IPR050082 GO:0000463(PANTHER)|GO:0000466(PANTHER)|GO:0001510(PANTHER)|GO:0005730(PANTHER)|GO:0008173(PANTHER)|GO:0008650(PANTHER)|GO:0016435(PANTHER)|GO:0030687(PANTHER)|GO:0031167(PANTHER)
Sed01g0297 848 Pfam FtsJ-like methyltransferase 22 201 IPR002877 GO:0008168(InterPro)|GO:0032259(InterPro)
Sed01g0297 848 Pfam Spb1 C-terminal domain 605 800 IPR012920 GO:0005634(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Sed01g0297 848 MobiDBLite consensus disorder prediction 796 812 - -
Sed01g0297 848 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510(InterPro)|GO:0008168(InterPro)
Sed01g0297 848 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 202 IPR029063 -
Sed01g0297 848 Pfam Ribosomal RNA methyltransferase Spb1, DUF3381 235 383 IPR024576 -
Sed01g0297 848 Gene3D Vaccinia Virus protein VP39 19 208 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0297 K14857 - - csv:101209556 1320.45
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g363 Blo02g00806 . . Bda08g00942 . . Bma05g00441 . . . Cma02g00391 . Car02g00254 Car20g00730 . . . . . . . . . . . . . . . . . Cone12ag1158 Cone8ag1207 . . Lsi10g00379 . Chy11g00372 . . . . . . . . . Sed01g0297 Cmo02g00398 Cmo20g00854 . . . . Cpe16g00247 Cpe05g01265 Bhi10g01995 Tan05g1293 Cmetu11g1187 . Hepe08g1009 . . . . . . . . . . Csa02g01268 . Cme11g00124
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007268 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35