Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0314 ATGGAGGACTGTATCAGCAGCGATGAGGACTATTATGACTCCGATCGAGAGTCTCTTCACGGCCTCGAGAACGAGGATTCGGAAATTCATTGGGCCCCTAAAAGCCCTTCCACTAAGGTTATTACTAAAGAATCACTCCTTGCGGCGCAGAAGGAGGATATGCGTAGAGTAATGGATATGCTATCGTTGAGGGAATACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTCGAGAAATTGTTTGCGGTACTTGTCGAGAAAGGGAGAAATCACTTGTTTGCAACAGCTGGTGTTACTATGAATGAGAATTTAAGTAATTGTTCCTCTGAGTCTTCCTCAATGGTGATGTGTGATATCTGTATGGAAGAAGTAGAGGGCAATGATGCAACTAGAGGGGACTGTGGTCATTGCTTTTGCAATAACTGCTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAAAGTCGGAGAATCAGATGTATGGCTTATAAATGCAATGCTATTTGTGATGAAGCTGTCGTTAGAAATCTAGTTAGTAAAAGGCATCCAGACCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCATACATCGAGGATAACAAGAGAGTCAAATGGTGTCCAAGTACCCCTCACTGTGGTAATGCTATACGTGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCTTGTGGTTTTCAATTTTGTTTCAGTTGCTTATCAGAAGCTCACTCGCCATGTTCTTGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACAGTTAACTGGATTACAGTACACACAAAGCCCTGTCCAAAGTGCCACAAACCTGTTGAGAAGAATGGTGGCTGTAACCTCGTCAGCTGCATCTGTGGACAAGCATTTTGTTGGCTGTGTGGTGGTGCCACTGGTCGAGAACACACTTGGTCGACTATTTCTGGTCACAGTTGTGGGCGTTACAAAGAAGAAACAGAACAGAAAGCGGAACGAGCAAAACGGGATTTGTATCGCTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAATTGAAGGAATCCATACAAGATAAGATCTCTATTTCTGAAGAGAAGGAATCCATGCTCCGGGATTTTAGTTGGGTCAACAATGGACTGCATAGACTTTTCCGATCAAGGCGGGTTCTATCATACTCCTATCCATTTGCCTTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACTCAGGAGGAAAGGGAGATAAAGCAGCATCTATTTGAGGACCAACAACAGCAACTCGAGGAAAATATTGAGAAGCTCTCCAAGTTCTTAGAGGAACCGTTTGATCAATACACTACAGATAAGGTAATGGAGATAAGGATGCAAGTCATTAATCTGACGGTTATCACTGATACTCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAATTGGGTATTCACAATATTGCCCCATACAAGTCGAAAGGCATCGAGAAGGCGCTGGAACTTTCTGCTTCTTGGAACAGCAAAGCAAATACTACCGACAGATATCTGCCATCAGACTGTGGTACAAGTGGAGGATTGTCAGAATGCAATCGACGGACTGGCTTGACTTCCGACGAGAACGGATGCTCTTCTAGAAAGCGTGCCAGAGATGACGTCGTCACTGGCAACTTTTTTGATCTAAACTTGCCTGCTGAGGTGGTTGATAGAAACTGA 1770 42.66 MEDCISSDEDYYDSDRESLHGLENEDSEIHWAPKSPSTKVITKESLLAAQKEDMRRVMDMLSLREYHARTLLIHYRWDVEKLFAVLVEKGRNHLFATAGVTMNENLSNCSSESSSMVMCDICMEEVEGNDATRGDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAYKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGFQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSTISGHSCGRYKEETEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQDKISISEEKESMLRDFSWVNNGLHRLFRSRRVLSYSYPFAFYMFGDELFKDEMTQEEREIKQHLFEDQQQQLEENIEKLSKFLEEPFDQYTTDKVMEIRMQVINLTVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSASWNSKANTTDRYLPSDCGTSGGLSECNRRTGLTSDENGCSSRKRARDDVVTGNFFDLNLPAEVVDRN 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2402945 2407615 - Sed0018843.1 Sed01g0314 699618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0314 589 Coils Coil 436 456 - -
Sed01g0314 589 CDD BRcat_RBR_ANKIB1 197 261 - -
Sed01g0314 589 Gene3D - 248 496 - -
Sed01g0314 589 Pfam Ariadne domain 329 589 IPR045840 -
Sed01g0314 589 SUPERFAMILY RING/U-box 114 202 - -
Sed01g0314 589 SUPERFAMILY RING/U-box 260 326 - -
Sed01g0314 589 CDD RING-HC_RBR_TRIAD1 117 170 - -
Sed01g0314 589 CDD Rcat_RBR_ARI1-like 273 326 - -
Sed01g0314 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 204 IPR013083 -
Sed01g0314 589 FunFam RBR-type E3 ubiquitin transferase 248 496 - -
Sed01g0314 589 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 49 83 IPR048962 -
Sed01g0314 589 SMART ibrneu5 260 325 IPR002867 GO:0008270(InterPro)
Sed01g0314 589 SMART ibrneu5 190 252 IPR002867 GO:0008270(InterPro)
Sed01g0314 589 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 GO:0008270(InterPro)
Sed01g0314 589 Pfam IBR domain 272 314 IPR054694 -
Sed01g0314 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 60 360 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Sed01g0314 589 SUPERFAMILY RING/U-box 191 259 - -
Sed01g0314 589 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Sed01g0314 589 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Sed01g0314 589 FunFam RBR-type E3 ubiquitin transferase 113 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0314 K11968 - - csv:101205066 1148.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0314 Sed-Chr1:2402945 Sed01g0316 Sed-Chr1:2402945 0.00E+00 dispersed
Sed01g0314 Sed-Chr1:2402945 Sed01g0315 Sed-Chr1:2402945 0.00E+00 tandem
Sed01g0314 Sed-Chr1:2402945 Sed05g3636 Sed-Chr5:44628223 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g3636 . 164 589 ARIADNE family AT4G34370 71.5 9.8e-182 634.0
Sed01g0314 . 164 589 ARIADNE family AT4G34370 70.3 1.4e-180 630.2
Sed01g0316 . 164 543 ARIADNE family AT4G34370 75.5 1.1e-175 614.0
Sed01g0315 . 164 542 ARIADNE family AT4G34370 75.5 5.2e-175 611.7
Sed05g3636 . 58 542 ARIADNE family AT2G16090 76.6 1.2e-223 773.5
Sed01g0316 . 58 544 ARIADNE family AT2G16090 76.5 7.6e-223 770.8
Sed01g0314 . 58 542 ARIADNE family AT2G16090 76.6 2.2e-222 769.2
Sed01g0315 . 58 542 ARIADNE family AT2G16090 76.6 2.2e-222 769.2
Sed05g3636 . 36 543 ARIADNE family AT3G27710 61.0 1.1e-182 637.5
Sed01g0314 . 37 543 ARIADNE family AT3G27710 60.7 2.7e-181 632.9
Sed01g0316 . 37 543 ARIADNE family AT3G27710 60.7 2.7e-181 632.9
Sed01g0315 . 37 542 ARIADNE family AT3G27710 60.7 1.0e-180 630.9
Sed01g0314 . 44 523 ARIADNE family AT3G27720 54.3 9.3e-144 508.1
Sed01g0315 . 44 523 ARIADNE family AT3G27720 54.3 9.3e-144 508.1
Sed01g0316 . 44 523 ARIADNE family AT3G27720 54.3 9.3e-144 508.1
Sed05g3636 . 44 522 ARIADNE family AT3G27720 54.2 2.7e-143 506.5
Sed07g0043 . 56 530 ARIADNE family AT1G05890 73.5 4.8e-219 758.4
Sed03g1846 . 66 545 ARIADNE family AT1G05890 71.9 1.4e-218 756.9
Sed09g0427 . 57 524 ARIADNE family AT1G05890 73.9 5.8e-217 751.5
Sed03g1846 . 41 600 ARIADNE family AT1G65430 75.4 5.9e-259 891.0
Sed07g0043 . 1 583 ARIADNE family AT1G65430 67.4 5.0e-242 834.7
Sed09g0427 . 16 583 ARIADNE family AT1G65430 68.5 2.0e-238 822.8
Sed03g1846 . 53 463 ARIADNE family AT2G31780 56.2 3.1e-146 516.2
Sed07g0043 . 53 449 ARIADNE family AT2G31780 57.6 2.4e-143 506.5
Sed09g0427 . 55 449 ARIADNE family AT2G31780 56.7 6.6e-141 498.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46