Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0316 ATGGAGGACTGTATCAGCAGCGATGAGGACTATTATGACTCCGATCGAGAGTCTCTTCACGGCCTCGAGAACGAGGATTCGGAAATTCATTGGGCCCCTAAAAGCCCTTCCACTAAGGTTATTACTAAAGAATCACTCCTTGCGGCGCAGAAGGAGGATATGCGTAGAGTAATGGATATGCTATCGTTGAGGGAATACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTCGAGAAATTGTTTGCGGTACTTGTCGAGAAAGGGAGAAATCACTTGTTTGCAACAGCTGGTGTTACTATGAATGAGAATTTAAGTAATTGTTCCTCTGAGTCTTCCTCAATGGTGATGTGTGATATCTGTATGGAAGAAGTAGAGGGCAATGATGCAACTAGAGGGGACTGTGGTCATTGCTTTTGCAATAACTGCTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAAAGTCGGAGAATCAGATGTATGGCTTATAAATGCAATGCTATTTGTGATGAAGCTGTCGTTAGAAATCTAGTTAGTAAAAGGCATCCAGACCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCATACATCGAGGATAACAAGAGAGTCAAATGGTGTCCAAGTACCCCTCACTGTGGTAATGCTATACGTGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCTTGTGGTTTTCAATTTTGTTTCAGTTGCTTATCAGAAGCTCACTCGCCATGTTCTTGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACAGTTAACTGGATTACAGTACACACAAAGCCCTGTCCAAAGTGCCACAAACCTGTTGAGAAGAATGGTGGCTGTAACCTCGTCAGCTGCATCTGTGGACAAGCATTTTGTTGGCTGTGTGGTGGTGCCACTGGTCGAGAACACACTTGGTCGACTATTTCTGGTCACAGTTGTGGGCGTTACAAAGAAGAAACAGAACAGAAAGCGGAACGAGCAAAACGGGATTTGTATCGCTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAATTGAAGGAATCCATACAAGATAAGATCTCTATTTCTGAAGAGAAGGAATCCATGCTCCGGGATTTTAGTTGGGTCAACAATGGACTGCATAGACTTTTCCGATCAAGGCGGGTTCTATCATACTCCTATCCATTTGCCTTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACTCAGGAGGAAAGGGAGATAAAGCAGCATCTATTTGAGGACCAACAACAGCAACTCGAGGAAAATATTGAGAAGCTCTCCAAGTTCTTAGAGGAACCGTTTGATCAATACACTACAGATAAGGTAATGGAGATAAGGATGCAAGTCATTAATCTGACGGTTATCACTGATACTCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAATTGGGTATTCACAATATTGCCCCATACAAGTCGAAAGGCATCGAGAAGGCGCTGGAACTTTCTGCTTCTTGGAACAGCAAAGCAAATACTACCGACAGATATCTGCCATCAGACTGTGGTACAAGTGGTAAAGTGGAGAGTACTTTTCTACACTTATTATTTTTTTATTTTGATATCCGTGACTGTCCAGGCCAACTTACGCGCACCTCGATTAATGTTACGGGACATACCACATAA 1737 41.91 MEDCISSDEDYYDSDRESLHGLENEDSEIHWAPKSPSTKVITKESLLAAQKEDMRRVMDMLSLREYHARTLLIHYRWDVEKLFAVLVEKGRNHLFATAGVTMNENLSNCSSESSSMVMCDICMEEVEGNDATRGDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAYKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGFQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSTISGHSCGRYKEETEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQDKISISEEKESMLRDFSWVNNGLHRLFRSRRVLSYSYPFAFYMFGDELFKDEMTQEEREIKQHLFEDQQQQLEENIEKLSKFLEEPFDQYTTDKVMEIRMQVINLTVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSASWNSKANTTDRYLPSDCGTSGKVESTFLHLLFFYFDIRDCPGQLTRTSINVTGHTT 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2402945 2407615 - Sed0018843.3 Sed01g0316 699620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0316 578 Coils Coil 436 456 - -
Sed01g0316 578 CDD BRcat_RBR_ANKIB1 197 261 - -
Sed01g0316 578 Gene3D - 248 496 - -
Sed01g0316 578 FunFam RBR-type E3 ubiquitin transferase 248 496 - -
Sed01g0316 578 SUPERFAMILY RING/U-box 114 202 - -
Sed01g0316 578 SUPERFAMILY RING/U-box 260 326 - -
Sed01g0316 578 CDD RING-HC_RBR_TRIAD1 117 170 - -
Sed01g0316 578 CDD Rcat_RBR_ARI1-like 273 326 - -
Sed01g0316 578 Pfam IBR domain 272 314 IPR054694 -
Sed01g0316 578 Pfam Ariadne domain 329 545 IPR045840 -
Sed01g0316 578 SMART ibrneu5 260 325 IPR002867 GO:0008270(InterPro)
Sed01g0316 578 SMART ibrneu5 190 252 IPR002867 GO:0008270(InterPro)
Sed01g0316 578 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 60 360 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Sed01g0316 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 204 IPR013083 -
Sed01g0316 578 SUPERFAMILY RING/U-box 191 259 - -
Sed01g0316 578 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Sed01g0316 578 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 GO:0008270(InterPro)
Sed01g0316 578 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Sed01g0316 578 FunFam RBR-type E3 ubiquitin transferase 113 204 - -
Sed01g0316 578 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 49 83 IPR048962 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0314 Sed-Chr1:2402945 Sed01g0316 Sed-Chr1:2402945 0.00E+00 dispersed
Sed01g0316 Sed-Chr1:2402945 Sed05g3636 Sed-Chr5:44628223 2.70E-304 dispersed
Sed01g0315 Sed-Chr1:2402945 Sed01g0316 Sed-Chr1:2402945 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0316 K11968 - csv:101205066 1072.77