Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0325 ATGACTGATTATTCAGCTTTTCGAACGGGCGGTCTCAAAAGGAAAATGCCGCGCCCCTATTTTCATAAGATTGTTCTCTCTTCCACTATCCAAGCTAGGAAATTGAGAATCCCAGAAACTTTTCTCAGGATAATCAGGGATGAGCTCTCTGCTGTTGCAACACTTACTGTTCCTGATGGCCATGTTTGGCGCGTGGGGTTGAGGAAAGCTGATAATAAATTATGGTTTGAAGATGGTTGGCATGGATTTCTTGAGCATTATTCCATAAGGGTTGGGTTTTTATTAGTATTCAGATATGAGGGAAACTCATCATTCTGTGTTTTTATCTTTAATCTTAATACATCTGAAATTAACTACCTGCCTAATGCACTCGGTGCTAATCAAAGGAACAATTACAACATTCAAAATAGAATCTTCGAAGATCTGGAGGATTATGACATTTCTGAAGCCATTCCTTCCAATCAGTCCTTGAATTCTGGCTCTTTACGTAATAAGCTATTTGGTGATGAATGGAATCAGCACCAATCTAAATCTGCAGGTATGTTGCAAGCCGAATATTTATCTACTCGAGATGTTGGGGTTCAGTTTAGTGCTGTTGAGGTTAAAAAATCTGCAGATGAGGTGAGATTTCAGAATTTGGGTGATGATGTTGTACGCAGAACTAAAAAGAGTGGAAGCAAAAAGCGTAAAATTGATTCTAGTGAGCAGCATCCATCCACAGGGGAGCATCGTCCATCTGCAGGCGAGCATCGTCCATCTTCTCATGGTGAAGATTTAGGAGACATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAACTGTCAATGCTGCAAAAGCGTTTGAGCCAACTAATCCCTTCTGCAGGGTTGTCTTGCGACCATCTTATCTATATAGAGGTTGCATAATGTATTTGCCATCATGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATAAAGCTTCAGACACCCGACGAGAGACAGTGGCCAGTCCGGTGTCTTTACAGAGTTGGCAGAGCCAAGTTAAGTCAGGGTTGGTATGAGTTTTGTCAGGAAAATAATTTAGGGGAGGGTGACGTTTGTGTGTTCGAGCTTCTCGGCATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCAATGATGATGCTGGACGAATGGTAAACCCAAATCCTCCCAGCATGATGAATCCACACCCGCCCCCGCTCCGAGGTGTTAACCAAATTAAGCTGATCAGAAATTAA 1284 41.74 MTDYSAFRTGGLKRKMPRPYFHKIVLSSTIQARKLRIPETFLRIIRDELSAVATLTVPDGHVWRVGLRKADNKLWFEDGWHGFLEHYSIRVGFLLVFRYEGNSSFCVFIFNLNTSEINYLPNALGANQRNNYNIQNRIFEDLEDYDISEAIPSNQSLNSGSLRNKLFGDEWNQHQSKSAGMLQAEYLSTRDVGVQFSAVEVKKSADEVRFQNLGDDVVRRTKKSGSKKRKIDSSEQHPSTGEHRPSAGEHRPSSHGEDLGDIRFRFYESASARKRTVTAEERERTVNAAKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDERQWPVRCLYRVGRAKLSQGWYEFCQENNLGEGDVCVFELLGMREIVLKVTMFRVNDDAGRMVNPNPPSMMNPHPPPLRGVNQIKLIRN 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2450488 2454218 - Sed0017286.1 Sed01g0325 699629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0325 427 CDD B3_DNA 19 111 IPR003340 GO:0003677(InterPro)
Sed01g0325 427 ProSiteProfiles B3 DNA-binding domain profile. 299 394 IPR003340 GO:0003677(InterPro)
Sed01g0325 427 MobiDBLite consensus disorder prediction 219 258 - -
Sed01g0325 427 Pfam B3 DNA binding domain 24 111 IPR003340 GO:0003677(InterPro)
Sed01g0325 427 Pfam B3 DNA binding domain 301 393 IPR003340 GO:0003677(InterPro)
Sed01g0325 427 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Sed01g0325 427 SUPERFAMILY DNA-binding pseudobarrel domain 292 394 IPR015300 -
Sed01g0325 427 Gene3D - 13 114 IPR015300 -
Sed01g0325 427 SMART B3_2 21 113 IPR003340 GO:0003677(InterPro)
Sed01g0325 427 SMART B3_2 299 394 IPR003340 GO:0003677(InterPro)
Sed01g0325 427 Gene3D - 276 396 IPR015300 -
Sed01g0325 427 PANTHER B3 DOMAIN-CONTAINING 18 379 IPR050655 -
Sed01g0325 427 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677(InterPro)
Sed01g0325 427 CDD B3_DNA 297 392 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0325 Sed-Chr1:2450488 Sed05g3647 Sed-Chr5:44717220 2.00E-203 dispersed
Sed01g0324 Sed-Chr1:2443988 Sed01g0325 Sed-Chr1:2450488 3.30E-51 tandem
Sed01g0325 Sed-Chr1:2450488 Sed01g0326 Sed-Chr1:2450488 7.10E-217 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37100 PF02362 B3 3.00E-18 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0325 - - - 0.0