Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0326 ATGACTGATTATTCAGCTTTTCGAACGGGCGGTCTCAAAAGGAAAATGCCGCGCCCCTATTTTCATAAGATTGTTCTCTCTTCCACTATCCAAGCTAGGAAATTGAGAATCCCAGAAACTTTTCTCAGGATAATCAGGGATGAGCTCTCTGCTGTTGCAACACTTACTGTTCCTGATGGCCATGTTTGGCGCGTGGGGTTGAGGAAAGCTGATAATAAATTATGGTTTGAAGATGGTTGGCATGGATTTCTTGAGCATTATTCCATAAGGGTTGGGTTTTTATTAGTATTCAGATATGAGGGAAACTCATCATTCTGTGTTTTTATCTTTAATCTTAATACATCTGAAATTAACTACCTGCCTAATGCACTCGGTGCTAATCAAAGGAACAATTACAACATTCAAAATAGAATCTTCGAAGATCTGGAGGATTATGACATTTCTGAAGCCATTCCTTCCAATCAGTCCTTGAATTCTGGCTCTTTACGTAATAAGCTATTTGGTGATGAATGGAATCAGCACCAATCTAAATCTGCAGATGAGGTGAGATTTCAGAATTTGGGTGATGATGTTGTACGCAGAACTAAAAAGAGTGGAAGCAAAAAGCGTAAAATTGATTCTAGTGAGCAGCATCCATCCACAGGGGAGCATCGTCCATCTGCAGGCGAGCATCGTCCATCTTCTCATGGTGAAGATTTAGGAGACATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAACTGTCAATGCTGCAAAAGCGTTTGAGCCAACTAATCCCTTCTGCAGGGTTGTCTTGCGACCATCTTATCTATATAGAGGTTGCATAATGTATTTGCCATCATGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATAAAGCTTCAGACACCCGACGAGAGACAGTGGCCAGTCCGGTGTCTTTACAGAGTTGGCAGAGCCAAGTTAAGTCAGGGTTGGTATGAGTTTTGTCAGGAAAATAATTTAGGGGAGGGTGACGTTTGTGTGTTCGAGCTTCTCGGCATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCAATGATGATGCTGGACGAATGGTAAACCCAAATCCTCCCAGCATGATGAATCCACACCCGCCCCCGCTCCGAGGTGTTAACCAAATTAAGCTGATCAGAAATTAA 1206 41.87 MTDYSAFRTGGLKRKMPRPYFHKIVLSSTIQARKLRIPETFLRIIRDELSAVATLTVPDGHVWRVGLRKADNKLWFEDGWHGFLEHYSIRVGFLLVFRYEGNSSFCVFIFNLNTSEINYLPNALGANQRNNYNIQNRIFEDLEDYDISEAIPSNQSLNSGSLRNKLFGDEWNQHQSKSADEVRFQNLGDDVVRRTKKSGSKKRKIDSSEQHPSTGEHRPSAGEHRPSSHGEDLGDIRFRFYESASARKRTVTAEERERTVNAAKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDERQWPVRCLYRVGRAKLSQGWYEFCQENNLGEGDVCVFELLGMREIVLKVTMFRVNDDAGRMVNPNPPSMMNPHPPPLRGVNQIKLIRN 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2450488 2454218 - Sed0017286.2 Sed01g0326 699630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0326 401 MobiDBLite consensus disorder prediction 193 232 - -
Sed01g0326 401 CDD B3_DNA 19 111 IPR003340 GO:0003677(InterPro)
Sed01g0326 401 PANTHER B3 DOMAIN-CONTAINING 18 353 IPR050655 -
Sed01g0326 401 Gene3D - 250 370 IPR015300 -
Sed01g0326 401 Gene3D - 13 114 IPR015300 -
Sed01g0326 401 ProSiteProfiles B3 DNA-binding domain profile. 273 368 IPR003340 GO:0003677(InterPro)
Sed01g0326 401 SMART B3_2 273 368 IPR003340 GO:0003677(InterPro)
Sed01g0326 401 SMART B3_2 21 113 IPR003340 GO:0003677(InterPro)
Sed01g0326 401 SUPERFAMILY DNA-binding pseudobarrel domain 266 368 IPR015300 -
Sed01g0326 401 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Sed01g0326 401 CDD B3_DNA 271 366 IPR003340 GO:0003677(InterPro)
Sed01g0326 401 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677(InterPro)
Sed01g0326 401 Pfam B3 DNA binding domain 275 367 IPR003340 GO:0003677(InterPro)
Sed01g0326 401 Pfam B3 DNA binding domain 24 111 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0326 Sed-Chr1:2450488 Sed05g3647 Sed-Chr5:44717220 5.50E-187 dispersed
Sed01g0325 Sed-Chr1:2450488 Sed01g0326 Sed-Chr1:2450488 7.10E-217 tandem
Sed01g0326 Sed-Chr1:2450488 Sed01g0327 Sed-Chr1:2450488 2.20E-151 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37101 PF02362 B3 2.70E-18 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0326 - - - 0.0