Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0327 ATGACTGATTATTCAGCTTTTCGAACGGGCGGTCTCAAAAGGAAAATGCCGCGCCCCTATTTTCATAAGATTGTTCTCTCTTCCACTATCCAAGCTAGGAAATTGAGAATCCCAGAAACTTTTCTCAGGATAATCAGGGATGAGCTCTCTGCTGTTGCAACACTTACTGTTCCTGATGGCCATGTTTGGCGCGTGGGGTTGAGGAAAGCTGATAATAAATTATGGTTTGAAGATGGTTGGCATGGATTTCTTGAGCATTATTCCATAAGGGTTGGGTTTTTATTAGTATTCAGATATGAGGGAAACTCATCATTCTGTGTTTTTATCTTTAATCTTAATACATCTGAAATTAACTACCTGCCTAATGCACTCGGTGCTAATCAAAGGAACAATTACAACATTCAAAATAGAATCTTCGAAGATCTGGAGGATTATGACATTTCTGAAGCCATTCCTTCCAATCAGTCCTTGAATTCTGGCTCTTTACGTAATAAGCTATTTGGTGATGAATGGAATCAGCACCAATCTAAATCTGCAGGTATGTTGCAAGCCGAATATTTATCTACTCGAGATGTTGGGGTTCAGTTTAGTGCTGTTGAGGTTAAAAAATCTGCAGATGAGGTGAGATTTCAGAATTTGGGTGATGATGTTGTACGCAGAACTAAAAAGAGTGGAAGCAAAAAGCGTAAAATTGATTCTAGTGAGCAGCATCCATCCACAGGGGAGCATCGTCCATCTGCAGGCGAGCATCGTCCATCTTCTCATGGTGAAGATTTAGGAGACATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAACTGTCAATGCTGCAAAAGCGTTTGAGCCAACTAATCCCTTCTGCAGGGTTGTCTTGCGACCATCTTATCTATATAGAGGTTGCATAATGGTAAGGTATTTTGGTTTTTGA 963 40.08 MTDYSAFRTGGLKRKMPRPYFHKIVLSSTIQARKLRIPETFLRIIRDELSAVATLTVPDGHVWRVGLRKADNKLWFEDGWHGFLEHYSIRVGFLLVFRYEGNSSFCVFIFNLNTSEINYLPNALGANQRNNYNIQNRIFEDLEDYDISEAIPSNQSLNSGSLRNKLFGDEWNQHQSKSAGMLQAEYLSTRDVGVQFSAVEVKKSADEVRFQNLGDDVVRRTKKSGSKKRKIDSSEQHPSTGEHRPSAGEHRPSSHGEDLGDIRFRFYESASARKRTVTAEERERTVNAAKAFEPTNPFCRVVLRPSYLYRGCIMVRYFGF 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2450488 2454218 - Sed0017286.3 Sed01g0327 699631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0327 320 CDD B3_DNA 19 111 IPR003340 GO:0003677(InterPro)
Sed01g0327 320 MobiDBLite consensus disorder prediction 219 258 - -
Sed01g0327 320 PANTHER B3 DOMAIN-CONTAINING 18 292 IPR050655 -
Sed01g0327 320 Gene3D - 13 114 IPR015300 -
Sed01g0327 320 SMART B3_2 21 113 IPR003340 GO:0003677(InterPro)
Sed01g0327 320 Pfam B3 DNA binding domain 24 111 IPR003340 GO:0003677(InterPro)
Sed01g0327 320 Gene3D - 276 316 IPR015300 -
Sed01g0327 320 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677(InterPro)
Sed01g0327 320 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0327 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0327 Sed-Chr1:2450488 Sed05g3647 Sed-Chr5:44717220 9.30E-145 dispersed
Sed01g0326 Sed-Chr1:2450488 Sed01g0327 Sed-Chr1:2450488 2.20E-151 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g506 . . . . . . Bma05g00507 . . . Cma02g00430 Cma20g00883 Car02g00285 Car20g00761 . . . . . . . . . . . . . . . . . Cone12ag1121 Cone8ag1166 Cone3ag1121 . Lsi10g00600 . Chy11g00424 . Blo04g00496 Blo13g00560 . . Bpe15g00884 . Bma03g00530 . Sed01g0327 Cmo02g00432 Cmo20g00891 . . . . . Cpe05g01232 Bhi10g02065 Tan05g1371 Cmetu11g0349 . Hepe08g1052 . . Cla09g01731 Cam09g1826 Cec09g1885 Cco09g1978 . . Cre01g0683 . Csa02g01212 . Cme11g00493
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004511 1 0 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 6 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37102 PF02362 B3 1.00E-10 CL0405 Sed TF