Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0334 ATGGGGGAACCGATTTCCGAAGAGAAGCTTGAAATGGAGCTCAAGGAGGGGTTCGGTGGCGACGGCGGCGGCGATGGCGGCGGTGACAGCAGCAGCAACGGTGGTTTGGGGTTCAAATTCAACCCCCAAGCGGCGGAGTTCTTCCCTAGGGCGCAGACCCAGATGCCCGTTACCGCCTATTTTCACCCCTATTTCCATTTTCCTACCTCTGATTGGTTCTTTGTTGGGGATCAAGAACCTGCTTATTTCATCCCCAATGCTGCCATTTCGCTTCCCAATTTCTCTAACAATGTTCGTTCTGATGATATTCAGCACAAGATTGTTAAACAGGTAGAATATCAGTTCAGTGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAGCACAATAGTAAAGATCCTGATGGTTATGTTCCAATTTCTGTTATTTCTTCCACCAAAAAAATAAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCTCTCCGTTCCTCTTCAAAGCTTGTTGTTAGTGCTGATGGGAAGAAAGTTAGGCGTAAGCATCCATTCACAGAAAAGGACAAAGAGGAACTGATGTCCCGCACAGTCGTTGTTGAGAATTTACCCGACAATCACTCGCACCACAACCTGGAGAAAATATTTAGTGTGATTGGAAGTGTGAAGACCATCCGAATCTGTCATCCTCCGGAATCGAATCCCTGTTGCTCTAAAGGTGAATTGTTTATCAGTAACAAGCTTCATGCACTTGTTGAATACGAGACTGTAGATTTTGCTGAAAGAGCGGCTGAGAAGTTAAATGATGAGAGAAATTGGAGGAAAGGGCTTCGAGTAAGGTTATTGCTTCGACGCACGCCAAAATCGGTTCTGAAGACTCGAAAATCGGAATTTGAAAGTATTCTGGATGAAGATGATTCACCACCTTCTGTTTCCATCGAACCCGAGTCCTCGCTGTCAAATATCACTGAACAGATTGTCGATTGCAATTCTGAAGAGAACTCTACATCATCTAAGAAGGGTTGGGGTCGAGGCCGTGGGAAGGGCCGTGGACGAATCCACACCCAACTCGATCGTAGCTACAGCTTTCCGGTCTCAGCTATGCAATCGAGTAGCCAGGTTCTTTGCGAAGCATCTTCCAAACTCACTTCGAAGAGTCCGAGAATGCCCGATGGGACTAAAGGTTTCACCATGGGACGAGGCAAGCCGTTAACTTCTAAACCTGTATCTTGA 1230 45.93 MGEPISEEKLEMELKEGFGGDGGGDGGGDSSSNGGLGFKFNPQAAEFFPRAQTQMPVTAYFHPYFHFPTSDWFFVGDQEPAYFIPNAAISLPNFSNNVRSDDIQHKIVKQVEYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIVQALRSSSKLVVSADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRVRLLLRRTPKSVLKTRKSEFESILDEDDSPPSVSIEPESSLSNITEQIVDCNSEENSTSSKKGWGRGRGKGRGRIHTQLDRSYSFPVSAMQSSSQVLCEASSKLTSKSPRMPDGTKGFTMGRGKPLTSKPVS 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2516289 2519064 + Sed0023862.1 Sed01g0334 699638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0334 409 ProSiteProfiles La-type HTH domain profile. 97 188 IPR006630 -
Sed01g0334 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 285 IPR000504 GO:0003723(InterPro)
Sed01g0334 409 Gene3D - 186 288 IPR012677 -
Sed01g0334 409 SUPERFAMILY RNA-binding domain, RBD 181 288 IPR035979 GO:0003676(InterPro)
Sed01g0334 409 PANTHER LUPUS LA PROTEIN-RELATED 43 400 IPR045180 GO:0003723(PANTHER)|GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005844(PANTHER)
Sed01g0334 409 SMART rrm1_1 196 279 IPR000504 GO:0003723(InterPro)
Sed01g0334 409 PRINTS Lupus La protein signature 189 205 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Sed01g0334 409 PRINTS Lupus La protein signature 136 151 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Sed01g0334 409 PRINTS Lupus La protein signature 110 127 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Sed01g0334 409 PRINTS Lupus La protein signature 167 180 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Sed01g0334 409 Gene3D - 99 185 IPR036388 -
Sed01g0334 409 SUPERFAMILY Winged helix DNA-binding domain 99 184 IPR036390 -
Sed01g0334 409 MobiDBLite consensus disorder prediction 1 18 - -
Sed01g0334 409 SMART la 101 181 IPR006630 -
Sed01g0334 409 Pfam RNA recognition motif 197 268 IPR000504 GO:0003723(InterPro)
Sed01g0334 409 MobiDBLite consensus disorder prediction 328 353 - -
Sed01g0334 409 Pfam La domain 107 165 IPR006630 -
Sed01g0334 409 MobiDBLite consensus disorder prediction 375 409 - -
Sed01g0334 409 MobiDBLite consensus disorder prediction 1 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0334 K15191 - - csv:101217948 559.296
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0334 Sed-Chr1:2516289 Sed07g2606 Sed-Chr7:41576789 3.70E-53 dispersed
Sed01g0334 Sed-Chr1:2516289 Sed05g3654 Sed-Chr5:44749180 1.00E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g467 . . . . . Bpe12g00064 . . . . Cma02g00438 . Car02g00296 . . . . . . . . . . . . . . . . . . Cone12ag1111 Cone8ag1153 . . Lsi10g00312 . Chy11g00436 . . Blo13g00567 Bda15g00027 . . . . . Sed01g0334 Cmo02g00443 . . . . . . Cpe05g01224 Bhi10g02075 Tan05g1392 Cmetu11g0139 . . . . Cla09g01715 Cam09g1809 Cec09g1871 Cco09g1964 . . Cre01g0696 . Csa02g01201 . Cme11g00508
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008129 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35