Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0335 ATGCCTCCCATGAACAATATCCTCTCTTTTTTCTTCCTAATTATTCTACCATTCCTTTTTATTCCCTCTCTTTCTGACCCTAATTACAATTATGACCCTCAAAAAGCTTATAATATGCTTAGCTATGATTTTTACGACAAATCTTGTCCTCGTTTGCCATCGATAATTCAGTATCATACTTGGGCTGCTGTCCAGAATGATTCTAGAATTGCTGCATCTCTTTTGCGGTTGCAATTTCATGATTGTATTGTAGATGGATGTGATGCATCGGTTCTACTCGACGATACTAAAGACATGAAAGGCGAGAAGAATGCTCCGGGCAATGCAAAATCGCTTCGAGGATTTGAAGTGATAGATGCCATAAAATTAGAAATAGAAACATATTGCCCAGAAACAGTTTCATGTGTTGATATCATAGGTCTTGCAGCCAGAGAAGCTGTCTATCTGGTCGGAGGACCATCGTGGGACCTTCCGCTAGGACGTAGAGATGGCTTAACCGCAAGCACAAAATCCGTCCTCGAACAGCTGCCATCCCCCAAGGCATCTCTAGAGAACAACACAGCCAAGTTTACCTCAAAGGGCCTTGACATAAAGGACCTAGCCGTGCTTTCAGGCGCCCACACCATCGGCTTCGCCCGCTGCGTGACATTCAAGGCCCGCCTCTTCAACTACAAGGGATCCGGCCAGCCCGACCCCGACATGAATGCAGCCATGCTCGTCGACCTTCGCTCCATGTGCCCCAACCGAAACGATGGCACCAACTCCAATTTGGCCCCCCTGGATGTGTCTACCTTCGAGAGATTCGACAATGTGTATTACACGAACTTGATGAGCGGTGTGGGGCTGTTGCAGTCGGACCAGAGTCTGATGGAGGACGACTACACGGCTCACCTTGTCCGACAGTACAGTTACGATAAGCATTTGTTCTACGATGACTTTGCCGAGTCCATGTTTCGGATGAGCTTGGTTGGGGTTTTGAGTGGTCGCGATGGGCAGATTCGAAAGAATTGTCGCGTTGTTAATGCTGATGAGGGGTATTAA 1041 47.26 MPPMNNILSFFFLIILPFLFIPSLSDPNYNYDPQKAYNMLSYDFYDKSCPRLPSIIQYHTWAAVQNDSRIAASLLRLQFHDCIVDGCDASVLLDDTKDMKGEKNAPGNAKSLRGFEVIDAIKLEIETYCPETVSCVDIIGLAAREAVYLVGGPSWDLPLGRRDGLTASTKSVLEQLPSPKASLENNTAKFTSKGLDIKDLAVLSGAHTIGFARCVTFKARLFNYKGSGQPDPDMNAAMLVDLRSMCPNRNDGTNSNLAPLDVSTFERFDNVYYTNLMSGVGLLQSDQSLMEDDYTAHLVRQYSYDKHLFYDDFAESMFRMSLVGVLSGRDGQIRKNCRVVNADEGY 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2527247 2530316 + Sed0002364.1 Sed01g0335 699639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0335 346 Pfam Peroxidase 59 303 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 SUPERFAMILY Heme-dependent peroxidases 40 341 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 ProSitePatterns Peroxidases active site signature. 71 82 IPR019794 GO:0004601(InterPro)
Sed01g0335 346 PANTHER PEROXIDASE 72-RELATED 19 340 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 FunFam Peroxidase 177 320 - -
Sed01g0335 346 ProSitePatterns Peroxidases proximal heme-ligand signature. 199 209 IPR019793 -
Sed01g0335 346 Gene3D - 43 341 - -
Sed01g0335 346 FunFam Peroxidase 43 191 - -
Sed01g0335 346 Gene3D Peroxidase, domain 2 177 320 - -
Sed01g0335 346 PRINTS Haem peroxidase superfamily signature 261 276 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 PRINTS Haem peroxidase superfamily signature 71 85 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 PRINTS Haem peroxidase superfamily signature 133 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 PRINTS Haem peroxidase superfamily signature 199 214 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 PRINTS Haem peroxidase superfamily signature 151 163 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 PRINTS Plant peroxidase signature 113 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 PRINTS Plant peroxidase signature 151 166 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 PRINTS Plant peroxidase signature 198 210 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 PRINTS Plant peroxidase signature 73 93 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 PRINTS Plant peroxidase signature 259 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 PRINTS Plant peroxidase signature 132 142 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 PRINTS Plant peroxidase signature 275 292 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 PRINTS Plant peroxidase signature 49 68 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 PRINTS Plant peroxidase signature 315 328 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 ProSiteProfiles Plant heme peroxidase family profile. 39 341 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g0335 346 CDD secretory_peroxidase 40 340 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0335 Sed-Chr1:2527247 Sed14g0821 Sed-Chr14:15904860 7.30E-103 dispersed
Sed09g0398 Sed-Chr9:3780154 Sed01g0335 Sed-Chr1:2527247 1.70E-51 dispersed
Sed01g0335 Sed-Chr1:2527247 Sed05g3655 Sed-Chr5:44756931 6.10E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0335 K00430 - csv:101209504 517.694