Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0343 ATGGCCCAGCCTTCCAACGGCGCCGATCTCAACCCCCAGCCTCCTCACCCTCACCACCAATGGTATCAACAGCAGCAGCAGTATCAGCAGCAATGGATGGCGATGCAGTACCCGGCCGCCGCCATGGCCATGATGCAGCAGCAGCAGCAGCAGCACATGATGATGTATCCTCCTCAGCATTACGTAGCGTATCCTCAACATCCTTATCAACAGCACCAACAGCCGCCGCCGCAACAGCAAGCTCACTCGCAGCGGCCTCGAAGGCAGGGGTCAACGGACGAGGTTAAGACGCTTTGGATTGGTGACCTTCAGCCATGGATGGACGAGACCTATCTCCAGAACTGCTTCGCTCACACCGGCGAGGTTTCCTCTGTTAAGGTTATATGTAGTAAGCAAACTGGTCAATCTGAGGGCTATGGATTTGTTGAGTTCTATTCGCATGCAACGGCTGATAAAGTTTTGCAGAATTATAGTGGTGCTATAATGCCAAACACAGAGCTTCCTTTCCGTCTCAATTGGGCAACCTTTAGTTCAAGTGATAGGCGACCAGAAACTGGTTCTGACCTATCTATATTTGTAGGTGATTTAGCTGTTGATGTAACTGATGCTATGCTGCAAGAAACTTTCTCCAATAGATACACATCTGTTAAAGGAGCGAAGGTGGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTATGGATTCGTTAGGTTTGGTGATGAAAATGAAAGGTCCAGGGCTATGACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCTAAGAAAGCATCTGGATACCAACAAGGCTATTCTACACAAGCTGTGGTTCTGGCTGGTGGACATGTGAATGGCATGGCCGTTCAGGGTCCGCAATCAGATGGCGAGTCAAACAACACAACTATATTTGTTGGTGGCCTTGATTCTGATGTTAGTGATGAAGATCTCAGGCAATATTTCTCTAAATTCGGTGAGATCGTCTCTGTGAAAATCCCAATTGGAAAAGGATGTGGATTTGTGCAGTTTGCCAACAGGTGA 1059 47.4 MAQPSNGADLNPQPPHPHHQWYQQQQQYQQQWMAMQYPAAAMAMMQQQQQQHMMMYPPQHYVAYPQHPYQQHQQPPPQQQAHSQRPRRQGSTDEVKTLWIGDLQPWMDETYLQNCFAHTGEVSSVKVICSKQTGQSEGYGFVEFYSHATADKVLQNYSGAIMPNTELPFRLNWATFSSSDRRPETGSDLSIFVGDLAVDVTDAMLQETFSNRYTSVKGAKVVIDSNSGRSKGYGFVRFGDENERSRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSTQAVVLAGGHVNGMAVQGPQSDGESNNTTIFVGGLDSDVSDEDLRQYFSKFGEIVSVKIPIGKGCGFVQFANR 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2572263 2579475 - Sed0000341.2 Sed01g0343 699647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0343 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 268 IPR000504 GO:0003723(InterPro)
Sed01g0343 352 FunFam Polyadenylate-binding protein RBP47B 177 279 - -
Sed01g0343 352 SMART rrm1_1 97 170 IPR000504 GO:0003723(InterPro)
Sed01g0343 352 SMART rrm1_1 308 352 IPR000504 GO:0003723(InterPro)
Sed01g0343 352 SMART rrm1_1 190 264 IPR000504 GO:0003723(InterPro)
Sed01g0343 352 Gene3D - 95 174 IPR012677 -
Sed01g0343 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 176 IPR000504 GO:0003723(InterPro)
Sed01g0343 352 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 54 352 IPR050825 GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005829(PANTHER)
Sed01g0343 352 Gene3D - 175 282 IPR012677 -
Sed01g0343 352 Gene3D - 292 352 IPR012677 -
Sed01g0343 352 Pfam RNA recognition motif 191 261 IPR000504 GO:0003723(InterPro)
Sed01g0343 352 Pfam RNA recognition motif 309 351 IPR000504 GO:0003723(InterPro)
Sed01g0343 352 Pfam RNA recognition motif 98 167 IPR000504 GO:0003723(InterPro)
Sed01g0343 352 CDD RRM1_SECp43_like 97 177 - -
Sed01g0343 352 MobiDBLite consensus disorder prediction 68 86 - -
Sed01g0343 352 SUPERFAMILY RNA-binding domain, RBD 189 351 IPR035979 GO:0003676(InterPro)
Sed01g0343 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 352 IPR000504 GO:0003723(InterPro)
Sed01g0343 352 FunFam Polyadenylate-binding protein RBP47B 95 175 - -
Sed01g0343 352 CDD RRM2_SECp43_like 188 267 - -
Sed01g0343 352 MobiDBLite consensus disorder prediction 1 23 - -
Sed01g0343 352 MobiDBLite consensus disorder prediction 68 94 - -
Sed01g0343 352 SUPERFAMILY RNA-binding domain, RBD 65 180 IPR035979 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0343 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0343 Sed-Chr1:2572263 Sed05g3659 Sed-Chr5:44786446 1.50E-143 dispersed
Sed01g0342 Sed-Chr1:2572263 Sed01g0343 Sed-Chr1:2572263 3.90E-162 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117