Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0355 ATGTCTTCCCCGCGTTACCGAATCGGCTACGCCCTTTCCCCCCACAAGGAGCGTTCCTTCATCCTCCCATCCCTCGTCGACTACGCCAAACACCACGGCATCGACTTGATCCGCATTGACCCTCTTATCCCTCTTTCCAAACAGTCCCCTTTCCACTGCATCCTCCACAACCTCCACGACCTCTCCTGGGTTCGCCAATTGCACCATTTCAGCTCCCAGTTCCCCGACGTCGCCGTCGTCGACCCCCCCGAGCTCATCTCCCCCCTCCTCAACCGCATTTCCATGCTCCAATTCGTCCATAACCTCAAAATCCCTAATGGGCTTCACCGAATCGAATCCCCCAAGCAAGTCGCGGTCTATGATTTGAACGCCCTTATTGTTAAAATTCCGTTGGAGTCCAATGGCAGTGCGGAATCGCATCAATTGTGTTTGGTGGCGAATGGTAATGGATTCAAGGGCTTAACCGCTCCCATTGTGGTGCAGGAATTTGTGAACCATGGGGGTGTTGTGTTCAAGGTCTACGTGGTCGGGGAATGTGTTGTTTGTGTAGCGAGGAAATCGCTGCCGGATATTTCGTCGGAGGAGGTGGAGAAGATGGATGCGGTGTCGAGCTTTTCGCGGATTTCTTCGCAAGGGGACGACGACGACGAGGGTAATGTTGAAATGCCATGTTTGGATTTTGTGATGCATGTTGCGGGGGGGTTAAGGGAAGCAATGGGGCTTAGGCTTTTTAACTTTGATCTTATTAGGGATAGTAATGATAAGAATAGGTACCTTGTGATTGATATTAATTATCTGCCTGGATATGCCAAAATGCCTAACTATGAGCCTTTCTTGACTAAGTTTTTCTTAGATATTGTTCATAAACCTACTGTAAATGATAATGAGGTAGCGTTCTGTTGA 903 49.28 MSSPRYRIGYALSPHKERSFILPSLVDYAKHHGIDLIRIDPLIPLSKQSPFHCILHNLHDLSWVRQLHHFSSQFPDVAVVDPPELISPLLNRISMLQFVHNLKIPNGLHRIESPKQVAVYDLNALIVKIPLESNGSAESHQLCLVANGNGFKGLTAPIVVQEFVNHGGVVFKVYVVGECVVCVARKSLPDISSEEVEKMDAVSSFSRISSQGDDDDEGNVEMPCLDFVMHVAGGLREAMGLRLFNFDLIRDSNDKNRYLVIDINYLPGYAKMPNYEPFLTKFFLDIVHKPTVNDNEVAFC 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2713703 2719963 + Sed0009822.1 Sed01g0355 699659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0355 300 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain 7 86 IPR041429 -
Sed01g0355 300 Gene3D - 111 208 - -
Sed01g0355 300 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain 117 285 IPR040464 -
Sed01g0355 300 Gene3D - 1 104 - -
Sed01g0355 300 PIRSF ITPK 1 298 IPR008656 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0032957(InterPro)|GO:0047325(InterPro)|GO:0052725(InterPro)|GO:0052726(InterPro)
Sed01g0355 300 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 82 273 - -
Sed01g0355 300 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 5 289 IPR008656 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0032957(InterPro)|GO:0047325(InterPro)|GO:0047325(PANTHER)|GO:0052725(InterPro)|GO:0052725(PANTHER)|GO:0052726(InterPro)|GO:0052726(PANTHER)|GO:0052746(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0355 K00913 - - csv:101218009 416.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0355 Sed-Chr1:2713703 Sed05g3678 Sed-Chr5:44919164 8.00E-82 dispersed
Sed01g0354 Sed-Chr1:2704877 Sed01g0355 Sed-Chr1:2713703 1.40E-77 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g439 . . . . Bpe07g00393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00292 . . . . . . . . . . . Sed01g0355 . Cmo20g00902 . . . . . . Bhi10g02090 Tan05g1437 Cmetu11g1551 . Hepe08g1091 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010108 0 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 0 32