Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0357 ATGCCCTTCTCAATGCTAAGCATTCTCTTTCTTCTTCCTTTTCTTTTCTATCTCCCTCTTTTGGTTGACTCAGTTTCTTTCAAAATCGATCGAATCGAGCCCAACGAAAACCGCTTACTTTACCAAGGAGATGCAGTTCCTTCTAATGGAGCAATTCTACTTAGTGATCCAGATTTCACTTGTCAAGTTGGTCGGGCTATTTACAAAGATGCTGTCCCAATTTGGGACTCCAAAGCAGGAAAAGTCACAGATTTCACTACCCATTTCACCTTCACCATTGATACACTAAATAAAAAAGAATTTGGCCATGGGGTTGCTTTTTTCTTGGGTCCAGCTGGATTTCAAATCCCTACAAACTCAGCTGGTGGGTTTCTTGGCCTTTTCAACAAGACATACAGTGATTCATCAACCAACCAACTTGTTCATGTTGAGTTTGATTCCTTTTCTAATGGTTGGGATCCTCGATTTGAACATGTCGGTATAAACATCAACTCTGTTTCTTCCTCTAGTTTCACACGGTGGAATGTCAGCTTACATAGCTTGGACACTGTGGATGTGTTGATCACCTATGATTCAGTCACTAAAAACTTGAGTGTGTCATGGAAATATCAAAAGACATCTAATTCTTTTGAAAATACAACTCTATCTTACCAGGTTGATCTCATGAAAGTTCTTCCTCAATGGGCTACGGTTGGATTCTCAGCTGCAACCGGTTCAGCTTTAGAGAGACATTTGATATTTTCATGGGAGTTCAACTCCACCTTGGAAATGAAGCAACCAGATGAAAATCATGGGGAAACAGTTGAAACAATTGTGGGTGTGACAGTTACATTTGGAGTTTTGATGATTATCATAGCAATAGCAACATTCCTAGTATTTTGGAGATTGAAGAAAAAGAAAAGAAAAGACCAAGAACCCGAAAATCTCGAGGAAGTAAACTTGACATCGATTAACGACGATTTCGAAAGAGGCGTTGGACCTAGGAGGTTTTCTCACAAGCTTCTCGCCATGGCAACCAATAACTTCTCAAATGAAAGAAAGCTTGGTCAAGGAGGATTTGGTGCAGTGTACAGAGGAAACATAGCAGACATAAATTTGACAGTAGCTGTGAAGAAAATCTCAAGGGGTTCTAGACAAGGAAAAAAAGAGTACATAACAGAAGTGAAGATCATTAGCCGGCTTCGACATCGAAATTTGGTGCAACTCATAGGTTGGTGTCATGACAAAGGCGAGTTCTTGCTGGTTTATGAATACATGCCTAATGGTAGCCTTGATTCTCATCTTTTTGGTAAAAGAACCCTTCTCTCTTGGGCTGTGAGATACAAGATTGCTTTAGGCTTAGCCTCTGCATTGCTATATCTCCATGAAGAATGGGAACAATGCGTGGTTCATAGAGATATTAAATCAAGCAATGTCATGTTAGATTCAAATTTTAATGTCAAGCTTGGAGATTTCGGGCTAGCTCGACTAATGGACCACGAGTTGGGTGCTCAGACAACTGGGTTGGTCGGAACTTTAGGCTACTTGGCTCCTGAATATATAAGCACAGGAAGAGCTAGTAAAGAATCAGATGTATTTAGCTTTGGGGTGGTTGCTTTAGAGATTGTGACAGGAAAAATGTCAAGAACCTCCATGGAAAAGGAATCTCATAAGGGTTTGGTGGAATGGGTGTGGGATCTTTATGGAAGTGGAGAATTGGTTGAGTGCATGGATGGGAAATTGCAATCTGATTGTGACAAAAAACAGGTTGAATGTTTGATGCTTGTTGGATTATGGTGTGCCTATCCAGACCCTAATCTTAGACCTTCCATAAAACAAGCAATTCAAGTACTTAACTTTGAGACAATGATGCCAAATCTTCCTAGTAAAATGCCTGTTCCAATGTATCATGCTCCTTCCACATCCATAAGCTCAAATGAACCTTCCATTACTGCAAGTCTTGACATGGGTCGTTGA 1956 40.34 MPFSMLSILFLLPFLFYLPLLVDSVSFKIDRIEPNENRLLYQGDAVPSNGAILLSDPDFTCQVGRAIYKDAVPIWDSKAGKVTDFTTHFTFTIDTLNKKEFGHGVAFFLGPAGFQIPTNSAGGFLGLFNKTYSDSSTNQLVHVEFDSFSNGWDPRFEHVGININSVSSSSFTRWNVSLHSLDTVDVLITYDSVTKNLSVSWKYQKTSNSFENTTLSYQVDLMKVLPQWATVGFSAATGSALERHLIFSWEFNSTLEMKQPDENHGETVETIVGVTVTFGVLMIIIAIATFLVFWRLKKKKRKDQEPENLEEVNLTSINDDFERGVGPRRFSHKLLAMATNNFSNERKLGQGGFGAVYRGNIADINLTVAVKKISRGSRQGKKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEYMPNGSLDSHLFGKRTLLSWAVRYKIALGLASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNVKLGDFGLARLMDHELGAQTTGLVGTLGYLAPEYISTGRASKESDVFSFGVVALEIVTGKMSRTSMEKESHKGLVEWVWDLYGSGELVECMDGKLQSDCDKKQVECLMLVGLWCAYPDPNLRPSIKQAIQVLNFETMMPNLPSKMPVPMYHAPSTSISSNEPSITASLDMGR 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2730600 2732555 - Sed0010798.1 Sed01g0357 699661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0357 651 FunFam L-type lectin-domain containing receptor kinase IX.1 327 418 - -
Sed01g0357 651 FunFam Lectin-domain containing receptor kinase A4.3 419 631 - -
Sed01g0357 651 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Sed01g0357 651 FunFam L-type lectin-domain containing receptor kinase IX.1 23 264 - -
Sed01g0357 651 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 259 IPR013320 -
Sed01g0357 651 CDD STKc_IRAK 348 612 - -
Sed01g0357 651 Gene3D - 22 269 - -
Sed01g0357 651 PANTHER - 42 621 IPR050528 GO:0005886(PANTHER)
Sed01g0357 651 ProSitePatterns Protein kinases ATP-binding region signature. 348 372 IPR017441 GO:0005524(InterPro)
Sed01g0357 651 ProSiteProfiles Protein kinase domain profile. 342 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0357 651 Gene3D Transferase(Phosphotransferase) domain 1 419 633 - -
Sed01g0357 651 SUPERFAMILY Protein kinase-like (PK-like) 326 634 IPR011009 -
Sed01g0357 651 CDD lectin_legume_LecRK_Arcelin_ConA 25 255 IPR001220 GO:0030246(InterPro)
Sed01g0357 651 MobiDBLite consensus disorder prediction 632 651 - -
Sed01g0357 651 Pfam Legume lectin domain 25 263 IPR001220 GO:0030246(InterPro)
Sed01g0357 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0357 651 Pfam Protein kinase domain 343 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0357 651 SMART serkin_6 342 616 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0357 Sed-Chr1:2730600 Sed05g3681 Sed-Chr5:44942308 3.60E-305 dispersed
Sed01g0356 Sed-Chr1:2723769 Sed01g0357 Sed-Chr1:2730600 3.10E-62 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78546 PF00069 Pkinase 7.30E-52 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0357 - - - 0.0