Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0375 ATGGTTGTTCTTGGATTATTTTTGGCTTGGAGAATTCGACATCCAAACACTGATGCCTACTGGTTGTGGGCAATGTCAGTTGTTTGTGAAATATGGTTTGCTTTTTCTTGGCTTCTTGATCAACTGCCCAAGCTTTGCCCTATAAATCGAGCCACAGATCTTAATGTACTGAAGGATAAGTTTGAAACACCTAGCCCTAGTAATCCTACTGGAAAATCTGATCTTCCAGGAATAGATATCTTTGTTTCTACTGCAGACCCAGAGAAAGAGCCCCCTCTTGTCACATCAAACACAATCTTGTCGATTTTAGCTGCTGATTATCCTGTTGAAAAGCTTGCTTGCTATGTTTCAGACGATGGAGGAGCCCTTCTAACCTTTGAGGCCATGGCAGAAGCAGCAAGTTTTGCTAACACATGGGTTCCATTCTGTCGAAAACATAATATTGAACCTAGAAATCCTGAGTCTTACTTCAATTTGAAGAGAGATCCATTCAAGAATAAAGTGCGATCTGATTTCGTTAAGGATCGTAGACGTGTGAAACGTGAGTATGATGAGTTTAAGGTTCGAATAAATGGTCTTCCTGATTCGATTCGTCGTCGATCTGATGCCTATCATGCAAGAGAGGAAATCAAAGCTTTGAAGCGTCAGAGGCAAAATGTGGTTGATGATGAACCATTGGAGAGTGTGAAGGTCCCTAAAGCTACATGGATGGCCGATGGAACCCATTGGCCCGGAACGTGGATGCAACCTTCTGCCGAGCACTCCAAGGGCGACCATGCTGGTATAATACAGGTGATGCTTAAACCTCCGAGTGATGAACCACTACATGGAGTTGCTGATGAAACTAAGCTATTTGATCTATCTGAGGTCGACATCCGTCTTCCTCTTCTTGTTTATGTTTCTCGAGAAAAACGTCCTGGCTATGATCATAACAAGAAAGCAGGGGCAATGAATGCTCTAGTTCGAGCATCGGCTATTATGTCAAATGGACCATTTATCCTCAACCTTGATTGTGACCATTATATATACAACTCTCAGGCAATGAGAGAAGGAATGTGTTTCATGATGGATCGTGGAGGAGATCGTATTTGTTATGTTCAATTCCCACAAAGGTTTGAGGGCATTGATCCTTCGGATCGTTACGCCAATCACAACACAGTGTTCTTTGATGTTAACATGAGAGCCCTTGATGGACTTCAAGGTCCGGTATATGTCGGAACAGGATGTCTCTTTAGAAGGATTGCCCTTTATGGTTTTGACCCACATAGATCAAAAGAGCAGCACCCTGGTTGTTGTAGTTGCTGCTTTGGTAAACGAAGGAAGCATACATCGATTGCAAATAATCATGAAGAGCATCAAGGCCTAAGAATGGTTGAGTCTGATGATGAAGAGATGGACTTATCCTTGTTCCCAAAAAGGTTTGGAAATTCTTCATTTCTAGTTGATTCAATTCCAGTTGCAGAGTTTCAAGGACGCCCGCTAGCCGATCACCCAGCTGTGAAATATGGACGCCCTCCTGGTGCTCTTACCATCCCCCGCGAACTTCTCGATGCATCAACTGTTGCTGAGGCAATCAGTGTCATTTCTTGTTGGTATGAAGATAAGACCGAATGGGGCCAACGAGTTGGGTGGATTTATGGATCTGTCACAGAAGATGTGGTCACCGGGTATCGAATGCATAATAGAGGATGGAAATCTATTTATTGTGTAACCAAACGCGATGCTTTTCGTGGAACTGCACCTATCAATCTAACTGATAGACTCCATCAAGTCCTTCGATGGGCTACTGGGTCGGTCGAGATTTTCTTCTCTAGAAATAACGCACTCTTGGCTAGTCCAAAAATGAAGATTTTGCAAAAAATAGCCTATCTTAACGTCGGAATCTACCCGTTTACTTCCATCTTCCTCATAGTCTACTGTTTTCTCCCTGCACTCTCCCTATTTTCAGGGCAATTTATTGTTCAGAGTCTCAATGTCACTTTCCTCACTTACCTTTTAGTCATCACCATCACTCTATGCCTGCTTGCTGTTCTTGAAATTAAATGGTCTGGCATTGAACTAGAAGAATGGTGGAGAAATGAACAGTTTTGGTTGATTGGAGGCACTAGTGCTCATCTTGCTGCTGTGCTTCAAGGCTTGCTAAAAGTCATTGCTGGTATTGAGATTTCTTTCACCCTGACATCCAAATCAGCTGGTGACGATTTGGACGATGAATTCGCCGATCTCTACATCGTGAAGTGGACGTCCCTCATGGTTCCTCCCATCACAATCATGATGGTCAACCTCATCGCCATCGCAGTAGGGGTCAGCCGTACAATCTACAGCACAATTCCGCAGTGGAGCCGTTTGATTGGTGGTGTTTTCTTCAGTTTTTGGGTCCTGGCTCATCTGTACCCGTTCGCCAAGGGGCTCATGGGAAGGCGAGGAAGGACGCCGACCATTGTTTTCGTGTGGTCGGGACTTCTTGCCATCACAATATCTCTTCTCTGGGTAGCCATTAATCCCCCAAGTGGTGCAAATGAAATTGGAGGTTCATTTTCTTTTCCTTGA 2550 43.96 MVVLGLFLAWRIRHPNTDAYWLWAMSVVCEIWFAFSWLLDQLPKLCPINRATDLNVLKDKFETPSPSNPTGKSDLPGIDIFVSTADPEKEPPLVTSNTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANTWVPFCRKHNIEPRNPESYFNLKRDPFKNKVRSDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYHAREEIKALKRQRQNVVDDEPLESVKVPKATWMADGTHWPGTWMQPSAEHSKGDHAGIIQVMLKPPSDEPLHGVADETKLFDLSEVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQAMREGMCFMMDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPHRSKEQHPGCCSCCFGKRRKHTSIANNHEEHQGLRMVESDDEEMDLSLFPKRFGNSSFLVDSIPVAEFQGRPLADHPAVKYGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSIYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPKMKILQKIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQSLNVTFLTYLLVITITLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSAGDDLDDEFADLYIVKWTSLMVPPITIMMVNLIAIAVGVSRTIYSTIPQWSRLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINPPSGANEIGGSFSFP 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2861467 2865227 - Sed0000976.2 Sed01g0375 699679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0375 849 SUPERFAMILY Nucleotide-diphospho-sugar transferases 93 643 IPR029044 -
Sed01g0375 849 FunFam cellulose synthase-like protein D3 284 421 - -
Sed01g0375 849 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 821 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)
Sed01g0375 849 Pfam Cellulose synthase 78 839 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Sed01g0375 849 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 285 423 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0375 Sed-Chr1:2861467 Sed05g3696 Sed-Chr5:45008180 0.00E+00 dispersed
Sed01g0374 Sed-Chr1:2861467 Sed01g0375 Sed-Chr1:2861467 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0375 K20924 - csv:101221949 1696.4