Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0376 ATGGACGCTCTCTTTGTCCCCGTCGCCTTCTCCGGATCTCCCCACTCTATACTCTCCCGCACCGCCAACGCCGGATCTCAATCGAGGATTGGACCTGTTTTCCCCTTCTCGCAGCGTTCTTCTGTAATTCGCCTCAATCGCTTTCCTGTTCCCTGTAAGGAGTTTTCCGATCCTCGCTTCGGTCGATTCCGTTGCGTCGCCGAGGCCTCCGATCACCGGCATAGTCACAATCACGGCCACCACCACCACCACCATGGCTGCCAGCACCATTGCAACAGTGACGGCGATGTAGTGGAGCTTACTGGAGCCCAGAAGGCGTTTGTTCGATTTGCCGAAGCTATTAGGTGGACGGACTTGGCGAATTATCTGAGGGAGCATCTACACTTGTGTTGCGGCTCTGCTGCTTTGTTCGTCACTGCGGCTGCGTGCCCTTATTTGGTGCCTAAACCTGCTGTGAAGCCTCTGCAGAATTTTTTCATTGCTGTTGCTTTCCCTCTAGTCGGGGTCTCTTCTTCTCTTGATGCTCTTACTGATATAAGCGGTGGGAAAGTAAACATCCATGTACTAATGGCCCTGGCAGCCTTTGCATCAATATTTATGGGGAACCCCTTGGAAGGAGGACTACTTCTTGTGATGTTTAATCTGGCTCATATTGCCGAAGAGTATTTCACAAAGCAATCAATGATTGATGTTAATGAGTTGAAGGAAAATCATCCAGATTTTGCGCTTGTTCTGGATATGAATGATGACAACCTTCCTGATACTTCAGATCTTAAGCATAGAAAGGTGCCGGTGCGTGACCTTGAAGTGGGCTCATATATCTTGGTGGGAGCTGGTGAGTCTGTCCCTGTAGATTGTGAGGTTTATCAAGGTTTTGCTACAATCACTGTTGAGCACTTGACTGGAGAAATCAAACCATTGCAAATAAGGGTTGGGGAAAGAGTTCCAGGTGGAGCAAGAAACTTGGACGGTAGGATCATAGTGAAGGCTACTAAAACGTGGGAGGAGTCAACACTTAGCAGGATTGTGCAGTTGACCGAAGAAGCACAACTTAATAAGCCAAGACTACAGAGGTGGCTTGATGAATTTGGTGAGAATTACAGCAAGGTGGTTGTAGTTTTATCTGTTGCTGTTGCTCTCATTGGACCGTTGTTGTTCAAGTGGCCATTTATTTGTACACCAGGTGTCAGAGGATCAGTTTATAGAGCACTTGGGCTCATGGTAGCTGCATCACCATGTGCACTTGCTGCAGCTCCATTGGCATATGCTATTGCGATAAGTTCCTGTGCAAGAAAGGGGATACTCCTGAAAGGTGGACATGTGCTCGATTCTATGGCTTCTTGTCACACCGTTGCATTTGATAAAACTGGGACATTGACTACAGGAGGACTTGTATTTAAAGCAATAGAACCCATTTATGGGCATAAGATTGGAGGAGATAAATCACATTTGGCTTCCTGTTGCATACCCAGCTGTGAAAAAGAAGCCCTTGCAGTGGCAGCTGCTATGGAAAAGGGTACTACTCACCCAATTGGAAGAGCTGTAGTAGATCATAGTGTGGGGAAAGACCTTCCTTCTATATCTGTTGAAACGTTTGAATATTTCCCTGGAAGAGGTCTCATTGCAACTCTGCATGGCATTAAGTCAGGAATTGGAGGTAAATTGCGGAAAGCATCCCTCGGTTCTGTGGATTTCATCACTTCCTTTTGCAAATCCGAAAATGAATCAAGGAAGATCAAGGAAGCTGTTAGAGCATCATCGTATGGAAGTGAATTTGTTCATGCTGCCCTTTCAGTTGATCAGAAGGTAACACTGATTCACCTTGAGGATCAGCCTCGACCTGGAGTTGTAGATGCAATAGCAGAACTCCGAGATCAGGCAACACTCCGTGTTATGATGTTAACAGGTGATCATGATTCAAGTGCATGGAAAGTTGCGAATGCTGTGGGAATAAATGAAGTTTACTACAGTCTTAAGCCCGAGGACAAACTTGCTCATGTGAAGGAAATTTCAAGGGAGAAGGGGGGTGGTCTGATTATGGTAGGGGAAGGTATAAACGATGCACCTGCACTTGCCGCAGCTACCGTGGGAATAGTTCTTGCCCATCGTGCAAGTGCAACTGCTACAGCTGTTGCGGATGTCCTTCTTCTTCAAGATAGTATTTCCGGTGTACCGTTCTGTATTGCCAAATCCCGTCAGACAACTTCACTGGTCAAGCAAAATGTGACCCTTGCCTTGTCATCTATCCTTTTAGCCTCTCTCCCATCCATTTTGGGCTTTCTTCCCTTGTGGCTAACGGTCCTTCTACACGAAGGTGGCACTCTCTTGGTTTGTCTCAACTCCATACGTGCTCTAAATCATCCCTCATGGTCATGGAAGCAAGATTTTCAAAATCTGATACACGATGCCAGTTCGAAACTGCACACGACCCCTGAAACTAGCTCGGGTATGATCAGAACTGCACCTTCATAG 2472 46.68 MDALFVPVAFSGSPHSILSRTANAGSQSRIGPVFPFSQRSSVIRLNRFPVPCKEFSDPRFGRFRCVAEASDHRHSHNHGHHHHHHGCQHHCNSDGDVVELTGAQKAFVRFAEAIRWTDLANYLREHLHLCCGSAALFVTAAACPYLVPKPAVKPLQNFFIAVAFPLVGVSSSLDALTDISGGKVNIHVLMALAAFASIFMGNPLEGGLLLVMFNLAHIAEEYFTKQSMIDVNELKENHPDFALVLDMNDDNLPDTSDLKHRKVPVRDLEVGSYILVGAGESVPVDCEVYQGFATITVEHLTGEIKPLQIRVGERVPGGARNLDGRIIVKATKTWEESTLSRIVQLTEEAQLNKPRLQRWLDEFGENYSKVVVVLSVAVALIGPLLFKWPFICTPGVRGSVYRALGLMVAASPCALAAAPLAYAIAISSCARKGILLKGGHVLDSMASCHTVAFDKTGTLTTGGLVFKAIEPIYGHKIGGDKSHLASCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSVGKDLPSISVETFEYFPGRGLIATLHGIKSGIGGKLRKASLGSVDFITSFCKSENESRKIKEAVRASSYGSEFVHAALSVDQKVTLIHLEDQPRPGVVDAIAELRDQATLRVMMLTGDHDSSAWKVANAVGINEVYYSLKPEDKLAHVKEISREKGGGLIMVGEGINDAPALAAATVGIVLAHRASATATAVADVLLLQDSISGVPFCIAKSRQTTSLVKQNVTLALSSILLASLPSILGFLPLWLTVLLHEGGTLLVCLNSIRALNHPSWSWKQDFQNLIHDASSKLHTTPETSSGMIRTAPS 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2868939 2879931 + Sed0018175.1 Sed01g0376 699680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0376 823 Gene3D - 445 732 IPR023214 -
Sed01g0376 823 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 67 810 IPR051949 -
Sed01g0376 823 SFLD p-type atpase 434 734 IPR044492 -
Sed01g0376 823 PRINTS P-type cation-transporting ATPase superfamily signature 681 700 - -
Sed01g0376 823 PRINTS P-type cation-transporting ATPase superfamily signature 705 717 - -
Sed01g0376 823 PRINTS P-type cation-transporting ATPase superfamily signature 627 637 - -
Sed01g0376 823 PRINTS P-type cation-transporting ATPase superfamily signature 604 615 - -
Sed01g0376 823 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Sed01g0376 823 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Sed01g0376 823 Pfam E1-E2 ATPase 258 432 - -
Sed01g0376 823 NCBIfam HAD-IC family P-type ATPase 582 761 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed01g0376 823 NCBIfam HAD-IC family P-type ATPase 260 473 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed01g0376 823 Gene3D - 463 612 IPR023299 GO:0000166(InterPro)
Sed01g0376 823 Gene3D - 225 350 - -
Sed01g0376 823 SUPERFAMILY Calcium ATPase, transduction domain A 259 345 IPR008250 -
Sed01g0376 823 SUPERFAMILY Calcium ATPase, transmembrane domain M 188 765 IPR023298 -
Sed01g0376 823 Pfam haloacid dehalogenase-like hydrolase 450 694 - -
Sed01g0376 823 SFLD C1.7: P-type atpase like 434 734 - -
Sed01g0376 823 NCBIfam heavy metal translocating P-type ATPase 186 783 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Sed01g0376 823 SUPERFAMILY HAD-like 450 781 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0376 Sed-Chr1:2868939 Sed05g3731 Sed-Chr5:45229701 1.00E-267 dispersed
Sed01g0376 Sed-Chr1:2868939 Sed12g2195 Sed-Chr12:32410702 7.90E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0376 K01534 - csv:101221102 1412.9