Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0377 ATGGCCCCACTTTCCGACTACAACCCGCCCAATGTCTCCTCCTCGCCGCCGCCCACGGCGGCGCCCACCCATATTTTCCGTTCCAAATTACCGGACATTACAATCCCCGACCACCTCCCTCCCCACAGCTACTGCTTCGAGAAACTCTCCGATCACTCCGACCGCCCCTGTTTCATCCTCGCCTCCACCGGAAAATCCTATTCTTATGCCGAAACCCACCGGCTCTCCGGCAAGGCCGCCGCCGCTTTTTCCAAACTGGGAGTTAAAAAAGGCGATGTAATTATGATTCTCCTCCAAAACTCTGCCGAATTCGTTTTCTCTTTTATGGGTTCGTCGATGATCGGCGCCGTCGCCACCACCGCCAATCCGCACTACACGGCGGCGGAGATTTCCAATCAATTGAAGGCCTCCGGTGCGAAATTGGTGGTCACTTACTCGCAATGCGTCGACAAGATCCGAGAACCCGGAGAGGATCTGACCGTTATTACCGTTGATGATCCGCCGGAGAATTGCCGGAGTTTCTCGATGGTTTATGACGCCGACGAAAGTGAGGTCCCGGCGGTGGAGATTGATTGGAACGACGCCGTTGCGCTGCCGTTTTCGTCGGGCACGACGGGTCTTCCGAAGGGTGTGATTTTGACCCACAAGAGAGTATGGTGTCAAGTAGATGGAGAGAATCCAAATGTGTATCTAAGAAACGACGACGTAGTATTATGTGTGCTCCCAATGTTCCACATATTCTCATTGAGCAGCGCAAAGTTTGAGATTGAGACATTGTTGCGCTTGATCGAGAGGCATCGGGTGACGGTGGCTCCCGTTGTGCCACCTCTGATCGTGGCGATGGTGAAAAACCCGAAGGTGGCGGATTTCAACCTCAGCTCGCTTCGGATGATACTTTCTGGGGCAGCACCGATGCGAAAGGAGCTGGAGGAGGCCCTCATGCATAGGATCCCTCAAGCAATTTTTGGTCAGCCTTTTCCAAGATCCAATTCGTTCTCCAAATTAAAATACGGAATCAACAATTTGGAAACGATATTTTTGGGAAAAGCTGTAAAATTTGAAGGAGATGATGAGAGATGGTTGACAACATTGGAAAGTGTAATGCAAACACCATTACAAGAGGAAAATTTGGTTTTATCCATATTAAAACTGAGTTTTATGGATACACCACAATTCAAATTTGATATTCAATTTGCAAAATATGTCCATGTTGTTATGTTTAACCATTGGGTCATTACAGACGCTGCCAGAAGGGAAAATGATGATGTTGCTGGTGAAGTTCCAGTGGCTTTCGTAATTCGATCAATTTACAACAAACTTATCGAAGAAGCAGTAAAAATACTCATTGCAAAAGAGGTTTTAATTGTAAAGTGTTTACATAAAGTATTATATTAA 1395 47.38 MAPLSDYNPPNVSSSPPPTAAPTHIFRSKLPDITIPDHLPPHSYCFEKLSDHSDRPCFILASTGKSYSYAETHRLSGKAAAAFSKLGVKKGDVIMILLQNSAEFVFSFMGSSMIGAVATTANPHYTAAEISNQLKASGAKLVVTYSQCVDKIREPGEDLTVITVDDPPENCRSFSMVYDADESEVPAVEIDWNDAVALPFSSGTTGLPKGVILTHKRVWCQVDGENPNVYLRNDDVVLCVLPMFHIFSLSSAKFEIETLLRLIERHRVTVAPVVPPLIVAMVKNPKVADFNLSSLRMILSGAAPMRKELEEALMHRIPQAIFGQPFPRSNSFSKLKYGINNLETIFLGKAVKFEGDDERWLTTLESVMQTPLQEENLVLSILKLSFMDTPQFKFDIQFAKYVHVVMFNHWVITDAARRENDDVAGEVPVAFVIRSIYNKLIEEAVKILIAKEVLIVKCLHKVLY 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2882160 2898747 + Sed0002118.1 Sed01g0377 699681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0377 464 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 22 340 - GO:0016207(PANTHER)|GO:0016405(PANTHER)
Sed01g0377 464 MobiDBLite consensus disorder prediction 1 21 - -
Sed01g0377 464 ProSitePatterns Putative AMP-binding domain signature. 198 209 IPR020845 -
Sed01g0377 464 Gene3D - 19 326 IPR042099 -
Sed01g0377 464 Pfam AMP-binding enzyme 48 319 IPR000873 -
Sed01g0377 464 SUPERFAMILY Acetyl-CoA synthetase-like 25 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0377 Sed-Chr1:2882160 Sed05g1380 Sed-Chr5:26808599 1.20E-89 dispersed
Sed01g0377 Sed-Chr1:2882160 Sed01g0378 Sed-Chr1:2902109 2.30E-11 tandem
Sed01g0377 Sed-Chr1:2882160 Sed05g3704 Sed-Chr5:45056475 3.30E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0377 K01904 - csv:101221344 525.013