Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0385 ATGAGCAGTTTCACCTTTACAACCCCAATCCAAACACCCTCCCTCCAATCCAAAACCCAAATCCCCTCTCCCACCCCTCTCCGCCCTTCCCTCCCTTCCTTCCCCCGCCGCCGCAACCCTCCTCCCCTCACGGCGGCGGCGGCGACGACCACGCCCGCCGAGGTCAGCATGGACGCCGATCGTCTCCAGAAAGGAATCGCCGAGTTCTACGACGAGTCGTCCGGGCTCTGGGAGAGCGTTTGGGGCGAGCATATGCACCATGGATTCTACGACCCGGATTCTTCCGTTTCCCTCTCCGATCACCGCGCCGCGCAGATCCGGATGATCGAGGAGGCGCTCCGGTTCGCCGGCGTTGCGGCGGCGGAGGCGGCGGTGGACGTTGGGTGTGGGATTGGGGGAAGTTCGAGGCATTTGGCCAGGAAGTTTGGGGCGAAATGTAGAGGGATTACTTTGAGCCCTGTTCAAGCCAAACGGGCTCAAGCTATTGCTGCCGCTGAAGGATTAAGTGATAAGGTGTGTTTTGAAGTGGCAGATGCTCTGAACCAACCATTCTCAGATGGGGAATTTGATCTGGTATGGTCCATGGAAAGTGGGGAACACATGCCTGACAAATCCAAGTTTGTGAGTGAACTGGTGAGAGTTGCAGCTCCAGGAGCTACCATTATTATAGTTACATGGTGCCATAGAAACCTTGGGCCCTCTGAGGACTCCTTGCAGCCATGGGAGCACAAGCTCCTTCAGAAGATTTGTGATGGCTTCTATCTCCCTGCTTGGTGCTCCACGGCTGATTACGTCAAGCTACTCGAGTCCCACGACCTACAGGAAATAAAGACAGCAGACTGGTCTGAGAATGTTGCTCCGTTTTGGCCCGCTGTTATTCGCTCTGCTTTGACTTGGAATGGCTTCACATCCCTTTTGCGAAGTGGGTGGAAAACAATAAAAGGAGCACTAGTGATGCCACTGATGATGGAAGGATTCAAGAAAGATGTTATCAAATTTGCCATTATTACTTGCCGTAAGCCTGAATGA 1029 54.13 MSSFTFTTPIQTPSLQSKTQIPSPTPLRPSLPSFPRRRNPPPLTAAAATTTPAEVSMDADRLQKGIAEFYDESSGLWESVWGEHMHHGFYDPDSSVSLSDHRAAQIRMIEEALRFAGVAAAEAAVDVGCGIGGSSRHLARKFGAKCRGITLSPVQAKRAQAIAAAEGLSDKVCFEVADALNQPFSDGEFDLVWSMESGEHMPDKSKFVSELVRVAAPGATIIIVTWCHRNLGPSEDSLQPWEHKLLQKICDGFYLPAWCSTADYVKLLESHDLQEIKTADWSENVAPFWPAVIRSALTWNGFTSLLRSGWKTIKGALVMPLMMEGFKKDVIKFAIITCRKPE 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2933620 2938701 - Sed0025175.1 Sed01g0385 699689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0385 342 ProSiteProfiles SAM-dependent methyltransferase gamma-tocopherol (gTMT)-type family profile. 51 342 IPR025774 GO:0008168(InterPro)|GO:0032259(InterPro)
Sed01g0385 342 Gene3D Vaccinia Virus protein VP39 71 340 IPR029063 -
Sed01g0385 342 Pfam Methyltransferase domain 125 223 IPR013216 GO:0008757(InterPro)
Sed01g0385 342 MobiDBLite consensus disorder prediction 1 54 - -
Sed01g0385 342 MobiDBLite consensus disorder prediction 25 39 - -
Sed01g0385 342 CDD AdoMet_MTases 129 226 - -
Sed01g0385 342 PANTHER ZGC:194242 62 294 IPR050447 -
Sed01g0385 342 MobiDBLite consensus disorder prediction 1 24 - -
Sed01g0385 342 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 62 341 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0385 K05928 - - csv:101205148 515.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0385 Sed-Chr1:2933620 Sed05g1331 Sed-Chr5:25986072 8.50E-11 dispersed
Sed01g0385 Sed-Chr1:2933620 Sed04g2528 Sed-Chr4:38146086 2.00E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g276 Blo03g00637 Blo03g01532 . Bda09g00488 . Bpe08g01040 . . . . . Cma09g00888 Car01g01015 Car09g00805 Sed01g0385 Cpe06g00711 Cpe02g00718 Bhi09g02012 Tan01g5059 Cmetu11g1228 . Hepe01g1362 Mch11g1104 . Cla11g01791 Cam11g1855 Cec11g1880 Cco11g1886 Clacu11g2017 Cmu11g1827 Cre11g2233 Cone6ag0121 Cone9ag0145 . . Lsi04g01294 . . . . . . . Bpe11g00496 . Bma07g01194 . . Cmo01g01244 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008769 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 33