Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0408 ATGTTTGATTTTCACCGATGTGGGATTTTTTTGTGCAATCGAATCATGAGCTCCCATTGCAACTGCACAGTTCTTGCTCTGTTTCTTCTTCTTCTTCTTCAATCGTGTTGCAATGGCCTCAATTTTGATGGGATTCTCTTGCTTTCCTTTAAATATTCCGTTTTGAACGACCCTCTTTTTGTGCTCCAAAACTGGAATTACTCCGACGAGACGCCGTGCTCTTGGCGGGGAGTCACCTGCGGCGCCGCCGCCGGTAATGGGTCTCGAGTTACAGCTTTGTCGCTGCCGAATTCTCAGCTTGTGGGCTCTGTTTCTTCCGATCTGGGTTTGGTTCAGAATCTTCAATCGGTTGATTTATCCAGTAATTCCTTTAATGGGTCTCTTCCCTTGTCTCTGTTCAACAATTCCATGCTTCGATTTCTTGATTTGTCTGAGAATTCGATCTCCGGCGATGTCCCGGCGGCAGTGGGTCTACTTCGGAATCTGCAAGTTCTTAACCTCTCCGGCAATGCTTTGTCCGGGAAGTTTCCGAGAGAACTTGTGAATTTGGGGAATCTCACGGTTGTGTCTCTGAAGAACAATTACATTTCCGGTGAGATTCCCGGTGGGTTTAAGACGGTGGAGTTTTTGGATTTGTCTTTCAATTTGATGAATGGGTCTTTGCCGGCTGATTTTGGCGGCGATCGTTTACGTTTCTTCAATATCTCGTACAACAAACTTTCCGGCAAAATCCCGCCGGATTTCGCCCACAATATTCCGGCCAACGCCACGATTGATTTTTCGTTTAACAACCTCACCGGAGAAGTCCCTGTTTCCGACGTGTTCATGAACCAAGAAGCAAACTCCTTCACCGGAAACCACCAACTCTGCGGCCAGTTAACGGAAACCCCATGCCCAATTCCTTCGTCGCCGGCGTCTCTCCCGCCGGCGATTGCCGCCTTTCCACTTGACCCAAGTACCCCAGAAACCACCTCGCCGGGAAAACAGAGCAAAACAGGGTTCAAATCGTCAACAATCGTCGCCATTGTACTCGGCGACGTTGTCGGATTAGCAATTCTGTGCCTCCTCTTCTTCTACGTTTACCATTTGAAGAGAAAAAACAAAACCGACGAAACCCATTCGAAAAACGAATCTAATTTGGCGAAAGACAGCTGGTCCACATCCTCATCGGAATCCAGAGGATTTTCACGATGGTCCTGCCTGAGAAAAGCAGAGGGACCGGAAGAGAGAAATTCGGAGCAGGGAAGTGTCGGGTCGGTCTCCGGCCACCGCGAGACGGCGGAGGAGGGGAAGAAGAGAGGGATTTTGGTGACGATGGATGGCGGAGAGAAGGAGCTGGAACTGGAGACGCTGTTGAAGGCGTCGGCGTACATTCTCGGCGCCACCGGATCGAGCATTACGTACAAGGCGGTGCTCGAAGACGGCACGGCGTTTGCGGTGAGAAGAATCGGCGACGGCGGAGTGGAGAAGTACAAGGATTTCGAGAACCAGATTCGAGGTGTGGCTAAATTGAGCCATCCAAATTTGGTTCGTGTTCGTGGGTTTTATTGGGGCAACGATGAAAAGCTCATTATTTATGACTTTGTTCCTAACGGTAGCCTCGCCAATGCTCGTTATAGGAAAATGGGCTCTTCGCCTTGTCATCTTCCATGGGAGGCCCGATTGAGAATAGCAAAAGGAGTGGCCCGTGGGCTTTCTTGTCTCCACGACAAGAAGCACGTCCATGCCAACTTGAGGCCCACCAACATTCTTTTGGGCTACAACATGGAGCCCAAGATAGGCGATTTCGGCCTCGACCGGCTCATGTTGGGCGACTCGAGTTACAAACCGGGTGCCTCCACTCGAAACTTTGGAAGTCAGAGATCCACCGCTTCGCGGGATAGCTTCCAAGACTACGTCGTTGGCCCGAGCCCTGGACCAAGTCCAAGCTTCATTAGTGGGGTTTCCCCGTACCTTGCACCGGAATCGTTACGGAGCCTCAAGCCTAACTCGAAATGGGATGTATACTCTTTTGGGATGATATTGCTTGAGCTACTAACAGGAAAGATCGTCGTGTTCGATGAGTTGGGTCAAGGGCTTGGGCTTGCAGTCGAAGACAACAGTCGAGCCCTACGGATGGCCGACATGGCGATTCGAGCTGACGTGGAAGGGAGGGAAGAAGCTTTGTTGTCTTTGTTTAAATTAGGATATAGTTGTGTAGCTCCTACCCCACAAAAAAGACCATCCATGAAAGAAGTATTGCATGGTTTGGAGAAATTTCCAACATTATCCACCTCATCACACTATTATGGTCTCTAG 2298 49.87 MFDFHRCGIFLCNRIMSSHCNCTVLALFLLLLLQSCCNGLNFDGILLLSFKYSVLNDPLFVLQNWNYSDETPCSWRGVTCGAAAGNGSRVTALSLPNSQLVGSVSSDLGLVQNLQSVDLSSNSFNGSLPLSLFNNSMLRFLDLSENSISGDVPAAVGLLRNLQVLNLSGNALSGKFPRELVNLGNLTVVSLKNNYISGEIPGGFKTVEFLDLSFNLMNGSLPADFGGDRLRFFNISYNKLSGKIPPDFAHNIPANATIDFSFNNLTGEVPVSDVFMNQEANSFTGNHQLCGQLTETPCPIPSSPASLPPAIAAFPLDPSTPETTSPGKQSKTGFKSSTIVAIVLGDVVGLAILCLLFFYVYHLKRKNKTDETHSKNESNLAKDSWSTSSSESRGFSRWSCLRKAEGPEERNSEQGSVGSVSGHRETAEEGKKRGILVTMDGGEKELELETLLKASAYILGATGSSITYKAVLEDGTAFAVRRIGDGGVEKYKDFENQIRGVAKLSHPNLVRVRGFYWGNDEKLIIYDFVPNGSLANARYRKMGSSPCHLPWEARLRIAKGVARGLSCLHDKKHVHANLRPTNILLGYNMEPKIGDFGLDRLMLGDSSYKPGASTRNFGSQRSTASRDSFQDYVVGPSPGPSPSFISGVSPYLAPESLRSLKPNSKWDVYSFGMILLELLTGKIVVFDELGQGLGLAVEDNSRALRMADMAIRADVEGREEALLSLFKLGYSCVAPTPQKRPSMKEVLHGLEKFPTLSTSSHYYGL 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3091372 3101692 + Sed0025218.1 Sed01g0408 699712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0408 765 CDD STKc_IRAK 459 753 - -
Sed01g0408 765 Pfam Protein kinase domain 647 748 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0408 765 ProSiteProfiles Protein kinase domain profile. 453 756 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0408 765 FunFam Leucine-rich repeat receptor-like protein kinase 40 202 - -
Sed01g0408 765 PRINTS Leucine-rich repeat signature 138 151 - -
Sed01g0408 765 PRINTS Leucine-rich repeat signature 159 172 - -
Sed01g0408 765 Pfam Protein tyrosine and serine/threonine kinase 476 611 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0408 765 Gene3D Transferase(Phosphotransferase) domain 1 529 761 - -
Sed01g0408 765 Pfam Leucine Rich Repeat 161 183 IPR001611 GO:0005515(InterPro)
Sed01g0408 765 Pfam Leucine Rich Repeat 113 134 IPR001611 GO:0005515(InterPro)
Sed01g0408 765 Pfam Leucine Rich Repeat 229 250 IPR001611 GO:0005515(InterPro)
Sed01g0408 765 Pfam Leucine Rich Repeat 185 205 IPR001611 GO:0005515(InterPro)
Sed01g0408 765 Pfam Leucine Rich Repeat 138 157 IPR001611 GO:0005515(InterPro)
Sed01g0408 765 SUPERFAMILY Protein kinase-like (PK-like) 458 750 IPR011009 -
Sed01g0408 765 SUPERFAMILY L domain-like 48 291 - -
Sed01g0408 765 MobiDBLite consensus disorder prediction 311 332 - -
Sed01g0408 765 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 184 752 IPR046959 -
Sed01g0408 765 MobiDBLite consensus disorder prediction 318 332 - -
Sed01g0408 765 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Sed01g0408 765 Gene3D Ribonuclease Inhibitor 205 300 IPR032675 -
Sed01g0408 765 Gene3D Ribonuclease Inhibitor 41 204 IPR032675 -
Sed01g0408 765 Gene3D Phosphorylase Kinase; domain 1 423 528 - -
Sed01g0408 765 MobiDBLite consensus disorder prediction 379 396 - -
Sed01g0408 765 FunFam Leucine-rich repeat receptor-like protein kinase 206 300 - -
Sed01g0408 765 MobiDBLite consensus disorder prediction 370 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0408 Sed-Chr1:3091372 Sed13g0474 Sed-Chr13:3219977 4.80E-131 dispersed
Sed01g0408 Sed-Chr1:3091372 Sed05g3729 Sed-Chr5:45202680 1.60E-288 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78549 PF00069 Pkinase 3.90E-28 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0408 - - - 0.0