Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0412 ATGGCGGTGGACCTCGTCGCCGGCCACTCCATCGCCGCCGCCGCTATGGACCAAGACTCCGCCGTCCATGCCGCCGCCGCCTCCGGCCTCCACACCCTCCAAAAGCTCATCACCATCCTCTCCCACTCCCCCCCTTCCAATCTCGACTCCGATTCCCAAGCCGTCGCCAACGCCGCCGTCTCCCACTTCCAAACCGCCATTTCTCTCCTTGCCCGCCACCACCGCTCCCCTCCCACCGGCCACGCCCGGTTCCGCCGCGCCCCTTTGGATTCCTCCCCGATTTACAACGCCACCCCCATTCAACAAATCCCCCCTCCCTCCGCCGCCACCACCACCACCACCACCATTAGTTTCTCTGAAATTAAGCCCCAACGTCATCAACCTTCTTCCTCTTCTTTTCAGATCACTGATCTCTCTAGGGTTTCCTCCGTCGTCTCTAAGCCTTCTTCTGGTCTTAAGAGGAAGTGCAGCGGCGGGTCGGAGAATTTGGGCTCTGGGAAGTGCGGCGGATCCTCTGCCGGTCGATGCCACTGCTCCAAGAAGAGCAGAAAAACAAGGTTGAAAAGGGTAGTGAGAGTTCCAGCCATAAGCTCAAAGAATGCTGATATTCCCCCTGATGATTATTCATGGAGGAAGTATGGACAGAAGCCAATAAAGGGATCTCCATATCCCAGAGGATATTACAAGTGTAGCAGCTTGAGAGGATGTCCGGCTAGAAAACATGTCGAGAGAGCCTCGGATGATCCATCTATGTTAATAGTGACTTATGAAGGCGACCATAATCACTCTCAATCTGTTGCAGAGGCCTCAAGTCTCATCCTTGAGTCATGGTGA 834 55.52 MAVDLVAGHSIAAAAMDQDSAVHAAAASGLHTLQKLITILSHSPPSNLDSDSQAVANAAVSHFQTAISLLARHHRSPPTGHARFRRAPLDSSPIYNATPIQQIPPPSAATTTTTTISFSEIKPQRHQPSSSSFQITDLSRVSSVVSKPSSGLKRKCSGGSENLGSGKCGGSSAGRCHCSKKSRKTRLKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3116447 3118303 + Sed0009790.1 Sed01g0412 699716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0412 277 SMART WRKY_cls 204 264 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g0412 277 Gene3D WRKY domain 189 265 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g0412 277 Pfam WRKY DNA -binding domain 206 262 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g0412 277 Pfam Plant zinc cluster domain 153 202 IPR018872 -
Sed01g0412 277 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 22 267 IPR044810 GO:0003700(InterPro)
Sed01g0412 277 MobiDBLite consensus disorder prediction 149 169 - -
Sed01g0412 277 SUPERFAMILY WRKY DNA-binding domain 200 264 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g0412 277 ProSiteProfiles WRKY domain profile. 199 265 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g0412 277 FunFam WRKY transcription factor 65 188 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0412 Sed-Chr1:3116447 Sed13g1775 Sed-Chr13:22795985 8.80E-59 dispersed
Sed01g0412 Sed-Chr1:3116447 Sed10g0657 Sed-Chr10:4510509 1.40E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37107 PF03106 WRKY 2.30E-26 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0412 - - - 0.0