Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g0422 | ATGGATAATCTCTTCCTTTGCATTTCACTCTTTCTCTTTTCTTTCCTTGTAGCCTTCACCTTTCTTCTTCGACCCCATCGCCAAAACCTTCCACCAACACCATTTTTTTCACTTCCAATAATCGGCCATCTCCACCTCGTCAAACATCCCGTCCATCGATCCCTTCACGACCTCTCGAAAAAATATGGCCCCGTCTTTTCTCTCCGCTTCGGTTCACGTCTCGTCGTTGTCATCTCATCTCCTTCGGTCGTCCAAGAATGCTTTACAAAGAACGATGTAGTTCTCGCCAACCGACCATTATTGAGCTCTGTAAAACCCATATCCTACAACTACACAACCATGTCCGTCGCCCCTTACGGCGAGCATTGGCGAAACCTTCGACGAATCGGCGCAGTCGAGATATTCTCCACGAGTCGGCTGAATCTGTTCGTGGGGATTCGAGAGGATGAAGTGAAGCGTTTGATGCGTAGGTTTTGTGGGAGCTCGTTGGAAGAGTTGAGGACAATTGAGCCGGAGTCCATGTTCTTAGATCTTATGTACAATGTTCTTATGAGAATGGTAGCCGGGGAGAAGGCTTTTGAAGGGTATAAGGGAAAATCGAGTGAGTTTCGAGAGGTGGTGACACAGACTATGGCAAATTCTGGATCAACAAATCCAGGAGACTTCATACCAATATGGAATTGGATTGACCCAAATGGCTTAGACAAGAAAATGATGAAGCTTGGACAAACAATGGATGAACTTCTTCAACAGCTGGTTGTTGGGATAAGGAATAATCAAGAAGGTGATGGCAACACTATGATTGATCGTTTGCTTCATTTGCAAAAAGCTGAGCCTGAAATTCATAGTGACCAAATTATCAAAGGACTCATACAGATCATATTATTAGCAGGGATTGACACGACAGCAATAACCTTAGAATGGGCTCTATCTCATTTACTTAACAATCCAAACGTGTTAGACAAAGCAATAGCTGAAATAGACAGTTTCGTAGGACAAGAGCGCTTGGTCAATGAAACAGATATATCAAGTTTAAGATACCTACAAGGAATCATAACTGAGACTCTACGATTGAACCCATCAACTCCATTGTTAGTGCCGCATTGCCCTTCCAAAGACTGTAAAATCGGAGGCTACGATGTGCCACGTGAGACAATTGTACTGGTCAACGCTTGGCTTATTCATAGAGATCCCAACCTATGGGAAGACGCCACCCATTTTAAGCCGGAACGACATATGAACCCTAATGGAGAGGAGCCGTATAAATTATTACCATTTGGGTTGGGGAGGAGAGCCTGCCCAGCAATAGGAATAGCTCAACGAGTGGCTAGCTTGGCATTGGCATCAATGATTCAATGCTTTGAGTGGCAAAGAGAAGGAACTTTGTTGGTTGATATGAGTGAAGGTGAAGGGATTACTATGCCTAAAGCTCAACCATTGGTAGCCAAATGCAAACCACGCCCTATCATCAAAGCTGTTTTTAAAGATGCAATTGATCCGTGA | 1503 | 44.05 | MDNLFLCISLFLFSFLVAFTFLLRPHRQNLPPTPFFSLPIIGHLHLVKHPVHRSLHDLSKKYGPVFSLRFGSRLVVVISSPSVVQECFTKNDVVLANRPLLSSVKPISYNYTTMSVAPYGEHWRNLRRIGAVEIFSTSRLNLFVGIREDEVKRLMRRFCGSSLEELRTIEPESMFLDLMYNVLMRMVAGEKAFEGYKGKSSEFREVVTQTMANSGSTNPGDFIPIWNWIDPNGLDKKMMKLGQTMDELLQQLVVGIRNNQEGDGNTMIDRLLHLQKAEPEIHSDQIIKGLIQIILLAGIDTTAITLEWALSHLLNNPNVLDKAIAEIDSFVGQERLVNETDISSLRYLQGIITETLRLNPSTPLLVPHCPSKDCKIGGYDVPRETIVLVNAWLIHRDPNLWEDATHFKPERHMNPNGEEPYKLLPFGLGRRACPAIGIAQRVASLALASMIQCFEWQREGTLLVDMSEGEGITMPKAQPLVAKCKPRPIIKAVFKDAIDP | 500 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 3185658 | 3188501 | - | Sed0018401.1 | Sed01g0422 | 699726 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g0422 | 500 | PRINTS | E-class P450 group I signature | 423 | 433 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0422 | 500 | PRINTS | E-class P450 group I signature | 286 | 303 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0422 | 500 | PRINTS | E-class P450 group I signature | 349 | 367 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0422 | 500 | PRINTS | E-class P450 group I signature | 306 | 332 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0422 | 500 | PRINTS | E-class P450 group I signature | 390 | 414 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0422 | 500 | PRINTS | E-class P450 group I signature | 433 | 456 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0422 | 500 | PRINTS | E-class P450 group I signature | 83 | 104 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0422 | 500 | PRINTS | E-class P450 group I signature | 59 | 78 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0422 | 500 | SUPERFAMILY | Cytochrome P450 | 31 | 487 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0422 | 500 | Gene3D | Cytochrome P450 | 23 | 489 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0422 | 500 | CDD | CYP81 | 63 | 480 | - | - | |
| Sed01g0422 | 500 | Pfam | Cytochrome P450 | 32 | 477 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0422 | 500 | PANTHER | CYTOCHROME P450 82C3-RELATED | 14 | 487 | IPR050651 | - | |
| Sed01g0422 | 500 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 426 | 435 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed01g0422 | 500 | FunFam | Cytochrome P450 family protein | 22 | 490 | - | - | |
| Sed01g0422 | 500 | PRINTS | P450 superfamily signature | 350 | 361 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0422 | 500 | PRINTS | P450 superfamily signature | 424 | 433 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0422 | 500 | PRINTS | P450 superfamily signature | 297 | 314 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g0422 | Sed-Chr1:3185658 | Sed05g3737 | Sed-Chr5:45274662 | 2.30E-198 | dispersed | |
| Sed01g0422 | Sed-Chr1:3185658 | Sed01g0423 | Sed-Chr1:3200958 | 9.10E-256 | tandem | |
| Sed01g0422 | Sed-Chr1:3185658 | Sed05g3734 | Sed-Chr5:45252888 | 2.20E-132 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g0422 | K13260 | - | csv:101204413 | 761.525 |