Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g0427 | ATGAAAGATATTTTGCTTTACATTTTTCTCTTTTTGATCTCTCTCTTTCTTGCTTTCAAGTTCTTGCTACACCATGGCAGAAACCTCCCACCATCCCCACTTTTTTCCCTACCATTAATAGGCCATCTCCATCTCCTCCGTCGTCCAATCCACCGAAATTTTCACGAGCTCTCAAAGAAGCACGGCCATGTCTTCTCCCTCTGGTTTGGTTCCCGTCTCGTTGTCGTCATATCGTCTCCGTCTGCGGTTCGTGAATGCTTCACAAAAAACGACATCGTTCTCGCCAACCGGCCATTTTTGAACACTGGAAAACACTTGACATACAACTTCAAAGTACTAGCCGTTGCCCCTTATGGCGAGCTTTGGCGTAACCTTCGTCGCATTAGTACTTGCGAGATTTTCTCAGCAAGTCGACTGAATTTATTCTCAGGAATTCGAGGAGATGAAGTCAAGCGCATGCTGCGTAAACTATGCAGTGGATCGATGGAAAGATGGTCTGTTGTCGAGCTCGAGCCGATGCTGATGGATCTCACGTCGAATATTGTCATGAGGATGGTTGCGGGGAAGAGGTATTTCGGAGACGATGTATCGGATGAAGGAAAAGCAAGGCAGTTTAGAGATGTTGTGAAGCGAGTTATGGCTTATGCTGGAGCAACGAATCCAGGAGATTTCATTCCCTTGTGGAATTGGATTGATCCAACTGGTTTGGAGAAGAAGATAATGAAGGTTGGACAAGAAGCTGATGCAATTTTTCAAGGTTTAATTGATGATATTCGGAACCAAAAGGAAAGTGGAAACACCATGATTCATCATTTGCTTCACTTGCAGAGCAGCCAACCTGAATACTTCAGTGACCAAATTATCAAAGGCCTCATACATGTTATACTTTTTGCAGGAATCGATACAACAGCTGTGGCATTAGAATGGGCACTCTCACATCTACTCAACAATCCAGAGGTGATAAAGAAAGCAAGATTTGAGATAGAGTGTTCCACCAGGCAAGAACGTCTAGTAGACGAAGATGATTTGTCGAGTTTGAGTTACCTACAAGGAATAATCTTGGAGACTTTGCGGCTGACACCAGCCGCTCCTATGCTTGTGCCACACTGTGCCGCCGAAGATTGCAAAATCGAAGGCTATGACATACCTCGTGACACAATTGTATTCGTTAATGCTTGGGCAATACACAGAGATCAAAATCTATGGGATGATGTCTCTAGTTTTAAGCCAGAAAGACATGAAAATGCAGTCGAATCTGATTCATATAAACTATTGCCATTTGGGTTAGGGAGGAGAGCGTGCCCGGGCGTAGGGATGGCACAACGCGTCGTTGGCTTGACTTTGGCATCGTTGATTCAATGCTTTGATTGGGAAAGAATGGATAGCTCATTGGTTGACATGACTGAAGGTCAGGGAATCACTATGCCAAAAGCTCAACCTCTAGTAGCTAAGTGTAAACCACTTCCTATCATGAGAGCTCTTGTTGGTTAA | 1491 | 44.27 | MKDILLYIFLFLISLFLAFKFLLHHGRNLPPSPLFSLPLIGHLHLLRRPIHRNFHELSKKHGHVFSLWFGSRLVVVISSPSAVRECFTKNDIVLANRPFLNTGKHLTYNFKVLAVAPYGELWRNLRRISTCEIFSASRLNLFSGIRGDEVKRMLRKLCSGSMERWSVVELEPMLMDLTSNIVMRMVAGKRYFGDDVSDEGKARQFRDVVKRVMAYAGATNPGDFIPLWNWIDPTGLEKKIMKVGQEADAIFQGLIDDIRNQKESGNTMIHHLLHLQSSQPEYFSDQIIKGLIHVILFAGIDTTAVALEWALSHLLNNPEVIKKARFEIECSTRQERLVDEDDLSSLSYLQGIILETLRLTPAAPMLVPHCAAEDCKIEGYDIPRDTIVFVNAWAIHRDQNLWDDVSSFKPERHENAVESDSYKLLPFGLGRRACPGVGMAQRVVGLTLASLIQCFDWERMDSSLVDMTEGQGITMPKAQPLVAKCKPLPIMRALVG | 496 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 3240766 | 3243614 | + | Sed0008293.1 | Sed01g0427 | 699731 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g0427 | 496 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 427 | 436 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed01g0427 | 496 | CDD | CYP81 | 62 | 481 | - | - | |
| Sed01g0427 | 496 | PRINTS | E-class P450 group I signature | 58 | 77 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0427 | 496 | PRINTS | E-class P450 group I signature | 177 | 195 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0427 | 496 | PRINTS | E-class P450 group I signature | 307 | 333 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0427 | 496 | PRINTS | E-class P450 group I signature | 287 | 304 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0427 | 496 | PRINTS | E-class P450 group I signature | 82 | 103 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0427 | 496 | PRINTS | E-class P450 group I signature | 434 | 457 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0427 | 496 | PRINTS | E-class P450 group I signature | 391 | 415 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0427 | 496 | PRINTS | E-class P450 group I signature | 350 | 368 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0427 | 496 | PRINTS | E-class P450 group I signature | 424 | 434 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0427 | 496 | FunFam | Cytochrome P450 family protein | 22 | 491 | - | - | |
| Sed01g0427 | 496 | PANTHER | CYTOCHROME P450 82C3-RELATED | 12 | 487 | IPR050651 | - | |
| Sed01g0427 | 496 | PRINTS | P450 superfamily signature | 351 | 362 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0427 | 496 | PRINTS | P450 superfamily signature | 298 | 315 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0427 | 496 | PRINTS | P450 superfamily signature | 425 | 434 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0427 | 496 | SUPERFAMILY | Cytochrome P450 | 30 | 487 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0427 | 496 | Gene3D | Cytochrome P450 | 18 | 487 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g0427 | 496 | Pfam | Cytochrome P450 | 31 | 478 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g0427 | Sed-Chr1:3240766 | Sed05g3737 | Sed-Chr5:45274662 | 9.20E-192 | dispersed | |
| Sed01g0424 | Sed-Chr1:3209323 | Sed01g0427 | Sed-Chr1:3240766 | 1.50E-113 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g0427 | K13260 | - | csv:105434396 | 816.224 |