Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g0428 | ATGCATCCTGATGATCAGCCGCAGCTACCGTTGTTAGAGGAAGAAGATGAAGAAACTGCTTATGACGTAACGCAGAAGGTTGTGGTGGTTGGGATCGACGAATCGGGCTCCGATTCCGATCTGGGTTCGCCGCCGTTTTCATGGAGGAAGCTGTGGCTGTTCACAGGGCCTGGGTTTTTGATGAGCATAGCGTTTTTGGATCCTGGGAATTTGGAGTCAAATCTTCAGGCGGGTGCCATTGCTGGGTATTCTTTGTTGTGGCTTTTGTTTTGGGCTACGGCTATGGGGCTCTTGATCCAGATGCTTTCGGCTAGGCTCGGCGTTGCCACTGGCAGGCACTTGGCTGAGCTTTGTAGAGATGAGTACCCAACTTGGGCGAGGATTGTGCTTTGGGTTATGGCGGAATTGGCCCTTATTGGGGCTGATATTCAGGAAGTTATTGGGAGTGCTATTGCGATTAAGATTCTTAGTAATGGTGCTTTGCCTCTTTGGGCTGGAGTTATCATCACTGCTTTAGATTGTTTTATCTTCCTGTTTCTTGAGAATTATGGTGTGAGGAAATTGGAGGCTGTTTTTGCTGTTCTTATCGCGACTATGGCACTCTCATTTGCTTGGATGTTTGGTGAAACTAAGCCAAATGGGAAAGAGCTTCTATTGGGTATTTTGATTCCAAAACTTGGTTCCAAGACAATTAAACAGGCTGTTGCTGTTGTGGGTTGTATCATTATGCCTCACAATGTGTTTCTGCACTCTGCTCTTGTTCAGTCACGAGATGTCGATCCGCGGAAGAAAGGGCGGGTCCGAGAAGCTCTAAGATACTACTCCATTGAGTCCACACTTGCCCTTCTTGTTTCCTTTATTATCAACTTGTTTGTTACTACTGTGTTTGCCAAAGCTTTCTATGGTACGAGCATGGCGAATAGTATCGGTTTAGTAAATGCAGGTGAATATCTTCAAGATAAATATGGAGGAGGGCTTTTCCCCATTTTGTACATCTGGGCTATTGGTTTGTTAGCTGCTGGCCAAAGTAGCACCATTACTGGTACATATGCAGGACAGTTTATAATGGGAGGCTTCTTGAACTTGAAGTTGAAAAAATGGCTTAGAGCTTTGATAACTCGAAGCTTTGCAATTGTGCCGACAATGATTGTCGCTCTGTTGTTTGAAACATCTGACGGGATGGTCGATATCCTGAATGAATGGCTCAATGTCCTCCAGTCAATTCAGATCCCCTTTGCTCTGATTCCTCTTCTGTGTTTGGCTTCTAAGGAACACCTTATGGGCACTTTCAAAATTGGCCCTATTTTAAAGATGTCCTCTTGGCTAGTGGCAGTCTTGGTGATGGCCATCAATGGGTATCTTTTGGTGAGCTTCTTCTCATCAGAAGTCAATGGAGTGCTCTTTGCCATTTTCGTGTTCGTCTTCATTGCTGCATATCTTGCTTTTGTCGTTTACCTCGTCCTTCGAAGCATTTCATTTTCAAGCTGGCACGACTTCATTAACCGCAAGACTTCCACAGTATCCGAAAACTGA | 1533 | 45.01 | MHPDDQPQLPLLEEEDEETAYDVTQKVVVVGIDESGSDSDLGSPPFSWRKLWLFTGPGFLMSIAFLDPGNLESNLQAGAIAGYSLLWLLFWATAMGLLIQMLSARLGVATGRHLAELCRDEYPTWARIVLWVMAELALIGADIQEVIGSAIAIKILSNGALPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPNGKELLLGILIPKLGSKTIKQAVAVVGCIIMPHNVFLHSALVQSRDVDPRKKGRVREALRYYSIESTLALLVSFIINLFVTTVFAKAFYGTSMANSIGLVNAGEYLQDKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWLRALITRSFAIVPTMIVALLFETSDGMVDILNEWLNVLQSIQIPFALIPLLCLASKEHLMGTFKIGPILKMSSWLVAVLVMAINGYLLVSFFSSEVNGVLFAIFVFVFIAAYLAFVVYLVLRSISFSSWHDFINRKTSTVSEN | 510 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 3254330 | 3257539 | + | Sed0007055.1 | Sed01g0428 | 699732 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g0428 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 369 | 386 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed01g0428 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 130 | 156 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed01g0428 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 234 | 257 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed01g0428 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 341 | 360 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed01g0428 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 160 | 179 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed01g0428 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 403 | 422 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed01g0428 | 510 | PRINTS | Natural resistance-associated macrophage protein signature | 185 | 206 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed01g0428 | 510 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 19 | 493 | IPR001046 | GO:0005384(PANTHER)|GO:0005774(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0042742(PANTHER)|GO:0046873(InterPro)|GO:0055072(PANTHER)|GO:2000379(PANTHER) | |
| Sed01g0428 | 510 | Pfam | Natural resistance-associated macrophage protein-like | 72 | 433 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed01g0428 | 510 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 49 | 427 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed01g0428 | 510 | NCBIfam | Nramp family divalent metal transporter | 56 | 425 | - | - | |
| Sed01g0428 | 510 | Hamap | Divalent metal cation transporter MntH [mntH]. | 37 | 459 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g0428 | Sed-Chr1:3254330 | Sed06g2052 | Sed-Chr6:44610069 | 7.50E-88 | dispersed | |
| Sed01g0428 | Sed-Chr1:3254330 | Sed05g3735 | Sed-Chr5:45266136 | 1.40E-251 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g0428 | K21398 | - | csv:101211711 | 889.797 |