Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0438 ATGGCGGACGAGCAGCCTTCCACCGGTAATCGCAGGCGGAGCAGAGGATCTGAGGCAGCCACCCGTCTTCAGGCTCTCGAACGTCTCAAAGCGATCCGCAGCGGCGGCCGTCGATCGGAAGCCGGCGGTTTCCAAGTCAAGTTAGAGAATCCGATCTACGATACCATTCCCGAAGATGAGTACGATGCTCTCGTTGCCAAGCGTCGCGAAGAAGCCCGGGGGTTTATCGTCGACGACGACGGTCTAGGATATGGAGACGAAGGCGAGGAAGAGGATTGGTCCAAAGCTGGAGTTTGTTTCTCCGACGAGTCTGACGGCGAGCCTGATAAACCTAAGAAGAGGAAGGCGGAGAAGAAAGAATCGCAACCGAAGAAGCCGTCTTCTTCTTCTTTATCGGCAGCGGCGGCCATGATGGGGAAACAAAAGCTTTCTTCGATGTTTACTTCGTCGATCTTCAAGGGTAGAGATGACAAGAGTAAAGCGTTGGCTTCTGATAGTATTGTCGATGATGTGATTGCAGAATTCGCGCCGGATGAGACTGATAGAGAGCGGCGTAGAAAGGGACAAATTGGTGCTTCATCGATTTCAAGGAGTTTAGCGCCTGTTTCTGCTGTGAAGTGCGAGGGATTTACTGCTCACAGTCTTGATTTAACTGGTGGAGCTGAATTGGTTAAGGGTACTGAAAATGGGAACTATGGAATGGCTAGGGTCGTAAAAAACAATGATTTGGAGGTCCAGGGAAATGGTGAAACTAAGGAATTTGATGCAAGGGAGGATTTAGATTCTGAAGTCAATCTCGATTCGGTTGGGCAATCACATAGCTCTTCGATTAAGGAAGATGTAATTGAAGATAACATGCCCATTGTGGTAGAATCGAAGGCGGATCCGTTGGTGAAGAAGGAGCCAGTTTGTACTTTGAATGCTAAGATTAGCGATGTCAAAGACCCAGCTTTGAGTGCTACTGCAGGATGGCAAGCAGTCATGAGTGAAGGGAGTGGAAATATTGATTCTCCTGCACATATTTCTGAAGAGAAATCCGATTTTGATATCGATGCCGATGGCTCTCTTCCTTTCTATGTCGTTGATGTGCATGAGGAGCTCTTTGGTGCAAATATGGGCACTGTTTATCTGTTTGGCAAGGTCAAAGCTGGAGATACATACCATAGTTGTTGTGTGGTGGTGAAAAATTTGCAAAGATGCATTTATGCTATTCCAAGTGCTTCCTTTCTTCATTCGGATGAGATGTCAAACCTTCAGAACGATGCTGAACAGTCTCAGCTTTCTCTTACAGATTTACATACCAAGTTACATGAAGTGACTGCAGGATTAAAAAATGAGATAGTCAAGCAGTTGCTTGATCTCAATGTTTCATCATTTAGCATGACACCGGTTAAGAGGAAATATGCATTTGAGCGTCAAGACATACCTACGGGGGAAAATTATGTGCTTAAGATCAATTACCCATTCAAGCATCCCCCACTTCCTGCTGATCTAAAAGGAGAATTATTCTGTGCTCTCTTAGGAACACATCGCAGTGCCCTGGAGCTTCTTCTCATTAAAAGGAAAATAAAGGGCCCTTCTTGGTTGTCAATTTCAAAATTTTCGTCATGTCCTGGTTCTCAACGAGTGAGCTGGTGCAAGTTTGAAGTGATAGTCGACTCTCCAAAAGATGTTCTGATTTCAACTTCATCAAGTAAAACTGTGGATATTCCTCCTATGATTGTCACTGCTGTAAACATAAAGACGATTATTAATGAAAGGCAGAATGTCAACGAAATTGTTTCTGCATCTGTTATATCCTGTCAAAGAGCGAAGATCGACGGCCCCATGTTGGCCACGGAATGGAAAATGCCTGGTATGCTTAAGCATTTTACTATCATTCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAGGAGTCAACAGATAGAAATTTGAAGGCTGGATCAAATGTTTTGATCTGCGAGGGCAATGAGAGGGCCTTGTTGAATAGATTGATGATAGAATTATTCAAATTGGATAGTGATATTCTGGTTGGACACAATATCTCTGGGTTTGACTTAGATGTTCTTCTCCATCGAGCCCAGTTTTGTCGAGTACCAAGCAGCATGTGGTCCAAAATAGGTCGTCTTAAGCGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGAACATTTTTGGGTCTGGAGCAAGTCCAGGAGTCATGTCTTGCATTGCTGGTCGGCTCTTATGTGATACGTACTTATCTTCCCGTGATCTATTGAAAGAGATAAGTTATTCCTTGACAGAGCTAGCAAAGACTCAACTTAATAAGGACCGCAAGGAAGTCACTCCACATGAAATTCCAAGAATGTATCAAGCATCAGAGTCTCTCATGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATTTAAGTGTTCTTCCTCTTACTCGTCAGTTGACTAATATCAGTGGTAACCTCTGGGGAAGAAGTCTACAGGGTGCTAGAGCCCAGAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCAAGAAGTATATTGTCCCCGACAAGATTTCATCCTATGTGAAGGAAAAAAAGATGGTTAAAAAGAGAACGAATCATGGTTCTGATGAAAAAAATGTTGATGAATTGGATTTAGATGATGCAAATATAGCTCCCAACACTGAAAGTGGAAAAGGCAAAAAAGGATCCTCCTATGCAGGTGGGCTAGTCTTGGAGCCAAAACGTGGTTTATATGATAAATATATATTGCTACTGGACTTCAACAGTCTGTATCCTTCCATCATTCAGGAATATAATATTTGCTTTACCACTGTTGAAAGATCTTCAGATGGTGTTGTTCCTCGTCTGCCATCTAGTAAAGTCACTGGAGTTCTTCCTGAGCTACTAAAAAACCTGGTTCAGAGGAGAAGAATGGTGAAGTCGTGGATGAAGAATGCATCTGGTCTCAAGCTGCAGCAACTTGACATTCAGCAGCAGGCATTGAAGCTCACTGCAAACAGTATGTATGGATGCCTTGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTGGCAGAGCTGATTACTTCACAAGGAAGAGAAATATTGCAGAGCACTGTTGATCTTGTGCAAAATAATCTGAACCTAGAGGTAATTTATGGTGATACTGATTCAATTATGATTCATAGTGGGCTGGATGATGTTGGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTTAACAAAAAATATAAGTGTTTAGAAATTGATCTTGATGGTTTGTACAAAAGAATGTTGCTTCTGAAGAAAAAGAAATACGCAGCTGTAAAGTTGGAGTTCAAGGATGGAACGCCATATGAGGTTATTGAGCGTAAGGGTCTTGATATGGTTCGTCGTGATTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAGTCAAATATTGTCTGGAGGTTCATGTGAGGATGTCATTGAATCAATACATGACTCTCTTATGAAGATACAAGAGGATATGAGGAAAGGGCAAGTTGCACTTGAGAAATATATCATCACAAAGACATTGACCAAGCCGCCTGAAGCCTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCACGAAGGTTGAAACAAATGGGATATTCAACTGGCTGTTCTGTTGGTGATACGATCCCATATATAATTTGCTGTGAGCAGGGATCTACTTCTGGTGGTTCTACAGGCATTGCTCAGCGGGCTAGACATCCTGATGAATTAAAAAAGGAAGATGGAAAATGGATGATTGACATCGATTACTACCTTTCGCAGCAGATTCACCCAGTGGTTTCTCGTCTATGTGCCTCAATTCAGGGCACTAGCCCAGAACGCTTGGCCGACTGTCTGGGGCTTGATTCATCGAAGTTCCAAAACAAAACAAGTGACATTTCTCGGAGTGATGTCTCCTCTTCCCTCTTGTGTTCTGCCAATGATGAAGAAAGGTATCAGGGATGTATGCCACTGACATTAACTTGCCCCAGTTGCTCTGGTACTTTTGAGTGTCCTGCTATCTTCAGTTCTATATACAAATCTATTGATGGAAAGCAAGAAATGCCAGTTGATGAACCTTCAAGCAAGTTTTGGAATAATTTGCACTGCCCGAAATGTCCGGACGAAGCTAGTGCGGGTAGAATGACTCCTGGAATGATTGCCAACCAGGTAAAAAGGCAAGCAGAGAGCTTCATTTCTATGTATTATAATGGCTTACTGATGTGTGAGGATGAAACCTGCAAATATGCAACACGTGCTATCAATCTTCGACTTATTGGCGACTCGGAGAAAGGAACTATTTGCCCAAACTACCCACAATGCAATGGTCGTCTAATAAGAAAGTACACAGAAGCCGACTTATACAAGCAGCTTGCATATTTTAGTCACATTTTGGATACCGTACGCTGTATGGAAAAGCAGTTGGAGGTTCATGCAAAATTAACTTTAGAGAAAGAATTGACAAAAATTCGGCCAATAGTCAAGTTAGCTGCATCGACAATTCAAAGTCTTCGAGATCGCATTGCATATGGTTGGGTACAGTTGCAGGATTTTGTAGTGACGGTTTGA 4620 42.62 MADEQPSTGNRRRSRGSEAATRLQALERLKAIRSGGRRSEAGGFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGVCFSDESDGEPDKPKKRKAEKKESQPKKPSSSSLSAAAAMMGKQKLSSMFTSSIFKGRDDKSKALASDSIVDDVIAEFAPDETDRERRRKGQIGASSISRSLAPVSAVKCEGFTAHSLDLTGGAELVKGTENGNYGMARVVKNNDLEVQGNGETKEFDAREDLDSEVNLDSVGQSHSSSIKEDVIEDNMPIVVESKADPLVKKEPVCTLNAKISDVKDPALSATAGWQAVMSEGSGNIDSPAHISEEKSDFDIDADGSLPFYVVDVHEELFGANMGTVYLFGKVKAGDTYHSCCVVVKNLQRCIYAIPSASFLHSDEMSNLQNDAEQSQLSLTDLHTKLHEVTAGLKNEIVKQLLDLNVSSFSMTPVKRKYAFERQDIPTGENYVLKINYPFKHPPLPADLKGELFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSCPGSQRVSWCKFEVIVDSPKDVLISTSSSKTVDIPPMIVTAVNIKTIINERQNVNEIVSASVISCQRAKIDGPMLATEWKMPGMLKHFTIIRKLDGGIFPMGFAKESTDRNLKAGSNVLICEGNERALLNRLMIELFKLDSDILVGHNISGFDLDVLLHRAQFCRVPSSMWSKIGRLKRSVMPKLGKGGNIFGSGASPGVMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTPHEIPRMYQASESLMNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKISSYVKEKKMVKKRTNHGSDEKNVDELDLDDANIAPNTESGKGKKGSSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDGVVPRLPSSKVTGVLPELLKNLVQRRRMVKSWMKNASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIHSGLDDVGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLEFKDGTPYEVIERKGLDMVRRDWSLLSKELGDFCLSQILSGGSCEDVIESIHDSLMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVARRLKQMGYSTGCSVGDTIPYIICCEQGSTSGGSTGIAQRARHPDELKKEDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQNKTSDISRSDVSSSLLCSANDEERYQGCMPLTLTCPSCSGTFECPAIFSSIYKSIDGKQEMPVDEPSSKFWNNLHCPKCPDEASAGRMTPGMIANQVKRQAESFISMYYNGLLMCEDETCKYATRAINLRLIGDSEKGTICPNYPQCNGRLIRKYTEADLYKQLAYFSHILDTVRCMEKQLEVHAKLTLEKELTKIRPIVKLAASTIQSLRDRIAYGWVQLQDFVVTV 1539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3370740 3384076 + Sed0002898.1 Sed01g0438 699742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0438 1539 FunFam DNA polymerase 1134 1320 - -
Sed01g0438 1539 CDD POLBc_alpha 903 1306 IPR045846 GO:0003887(InterPro)|GO:1902975(InterPro)
Sed01g0438 1539 FunFam DNA polymerase 1329 1525 - -
Sed01g0438 1539 ProSitePatterns DNA polymerase family B signature. 1058 1066 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
Sed01g0438 1539 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 14 1537 - GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER)
Sed01g0438 1539 Gene3D - 571 887 IPR036397 GO:0003676(InterPro)
Sed01g0438 1539 Pfam DNA Polymerase alpha zinc finger 1330 1535 IPR015088 GO:0003887(InterPro)|GO:0006260(InterPro)
Sed01g0438 1539 SUPERFAMILY DNA/RNA polymerases 855 1306 IPR043502 -
Sed01g0438 1539 Gene3D Palm domain of DNA polymerase 897 1120 IPR023211 -
Sed01g0438 1539 MobiDBLite consensus disorder prediction 88 124 - -
Sed01g0438 1539 FunFam DNA polymerase 968 1017 - -
Sed01g0438 1539 SMART polmehr3 571 1070 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Sed01g0438 1539 SUPERFAMILY Ribonuclease H-like 353 859 IPR012337 -
Sed01g0438 1539 Coils Coil 1084 1104 - -
Sed01g0438 1539 Pfam DNA polymerase family B, exonuclease domain 511 765 IPR006133 -
Sed01g0438 1539 MobiDBLite consensus disorder prediction 76 135 - -
Sed01g0438 1539 Gene3D - 358 557 - -
Sed01g0438 1539 Pfam DNA polymerase family B 831 1291 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Sed01g0438 1539 FunFam DNA polymerase 571 885 - -
Sed01g0438 1539 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Sed01g0438 1539 PRINTS DNA-directed DNA-polymerase family B signature 927 940 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Sed01g0438 1539 PRINTS DNA-directed DNA-polymerase family B signature 1003 1015 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Sed01g0438 1539 PRINTS DNA-directed DNA-polymerase family B signature 1056 1064 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Sed01g0438 1539 Gene3D - 398 524 - -
Sed01g0438 1539 Gene3D DNA Polymerase alpha, zinc finger 1329 1524 IPR038256 -
Sed01g0438 1539 Gene3D - 1134 1319 IPR042087 -
Sed01g0438 1539 MobiDBLite consensus disorder prediction 1 22 - -
Sed01g0438 1539 CDD DNA_polB_alpha_exo 571 822 - -
Sed01g0438 1539 Gene3D Helix hairpin bin 973 1016 - -
Sed01g0438 1539 MobiDBLite consensus disorder prediction 1 18 - -
Sed01g0438 1539 MobiDBLite consensus disorder prediction 873 908 - -
Sed01g0438 1539 NCBIfam DNA polymerase (pol2) 51 1288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0438 Sed-Chr1:3370740 Sed03g2353 Sed-Chr3:18986244 9.30E-49 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0438 K02320 - csv:101211201 2613.95