Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0454 ATGAGAGTTTCTCCTTTGAGTTTGAGATTCTTCATTTCCCTTCTATCATTCTTCAGCGCAGGATTTGCGTTTGTTGCTGATTCCGGCATTTCATCTAGGAGGATTCTGCATCAGCCGCTCTTTCCGGTTGGGTCCGAGCCGCCGCCGGACATTGACTTGACTCCACCGCCTCCGCCGCCGACGCCGGACTCTCCCTCCGTTGATCAGCCTTTTTTCCATGAGCTGCCGACCAGTCCAGATCAGAGTCAATCGTCTCCGTCGACTAGCAATGGAACTATGCCCATCCCGGCTGCTACGGCGCAGCAGTCTAAGCCGACGAAGACCGTCGCGATTGCGATTTCGGTTGGGATTGTGACCTTGGGGATGCTTTCTGCTCTGGCGTTCTTTCTTTATCGTCACCGGGCTAAGCATCCCGGTGAGTCGCAGAAGCTTGTGGGAGGGAGTAATCCGGAGAGATTTGTGGAGGATTCGAGAGCGCCGCCGTCTAGTTTTTTCTATCTTGGAACTGTGGAGCCGAGTCAGAGCTCTGTGATTGAGCAGAATGGTGTGAATGGTGCTAATAGCTCTCCGTATCGGAAGCTGAATTCGATTAAGATGTCGGATCGTTACCGGCCGAGTCCGGAATTGCAGCCGCTTCCTCCTCTGCAGAAGCCGGTGGTGGCTATGTCGCCTCCGGCTGTGTTCTCTTCCGATGATGAAAGTCAGAATACGGTATTCCATACTCCACAACGTACGTCGGTTATTAGTCACGACGACGGATTTTTCTCGCCGGCTTCTCGTCGGAGTAACTCGGTGAAGAGCTGTTCCACAGCGAGTTTTAAGAACGAGCATATGAATTCCAATCCTCCTCCGATTCCTCACTCTAAACGAACCTCTCCTAAATCGAGATTTTCGGCTTCTTCGACGAAGCGGAATTCGTCTCAGCCTCAGCCACCGCCACCGCCGCCGCTTCCTCCACTGCGTCCGGTTGATGACGTTCGTGAATCTCCGAATTCGAAAGAAACAGTGCCTTTCTCTTCCACGAGACCTAAATTTTCGAAGCCTCCGCCTCCGCCGAATTTGGCGCTTCTTCAAACAATTAGCAGTTCGGCCACATTTCCTCAAGTTCCAAAACCTGCTGCAGCTCCACCGCCACCTCCGCCGCCGCCGCCACCACCTCCACGGCCACCGCCGCATCCGGTTTCATATTCAACGCCTCAAAAACTAGGGTTACCGGTAACCAGAATGGCTGCCGTCGCTCCTCCAGACTCCTCCAAGTCACTATCCTACTCAACAGCGAGATTAAACTCATCTTCCAAATCCACACCGATTTCTGCACCAGAAAATTCTGCCAAAGAAGATGCTGTCCAGAGGATTAATTCCATGGATAGGCTCGAAGCAGATGATACTGAAGGTTCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGAGCAACCTCAGACCGAGCTACCGTTTGGGATCAACTCAAATCAAGCTCATTCCAATTAAACGAGGACATGATGGAGACGCTTTTCGGCTTCAATTCCGCAAATTCTGCTCCGAAAGAGGCCTCGAGAAAGTCTGTTCTTCCTCCTGTTGAGAAGGAAAATAGAGTATTGGATCCCAAAAAATCACAGAACATTGCAATACTTCTAAGAGCACTCAACGTTACGCGCGATGAAGTGATTGAAGCCCTTCAAGATGGTAACCCAGAAGGCTTTGGTACTGAGCTTTTAGAAACTCTAGTAAAGATGGCTCCAACCAAAGAGGAAGAGATAAAACTGAGAGAGTACTGTGGTGATAGTTCAAAATTAGGGACTGCAGAAAGATTTCTCAAGGCAGTGCTTGAAGTTCCATTTGCTTTTAGAAGAGTTGAGGCCATGCTGTACAGAGCCAATTTTGATTCAGAAGTAAAGTACTTGAGGAAGTCATTCCAAACCCTTGAGGGTGCAAGTGAAGAATTAAAGAATAGTAGACTTTTTCTTAAACTTCTTGAAGCAGTTCTTAAGACAGGAAATAGGATGAATGTCGGTACGAATCGCGGTGATGCTAAATCCTTCAAGCTTGAAACCCTCTTAAAATTAGTAGATATTAAGGGAACGGATGGAAAGACAACATTGCTTCATTTTGTTGTTCAAGAAATTATCAGATCAGAAGGTGGTGCTGATTCATCTAGCGACAACCTTCAACCCCGTACGCAATCCAAAATTGAGGACGAATTCAGAAAGCAGGGCTTGCAGGTTGTGGCTGGACTAAGTAGAGACCTTAGCAACGTGAAAAACGCAGCGGGTATGGATTCAGACGTCTTGAGCAGTTACGTTACAAAGCTCGAAATGGGGCTTGAAAAAGTAAGGATGGTTTTGCAATTCGAAAAGCCAGGAATGCAGGGAAAGTTCTTCGACTCAATGAAAACATTCTTGAAAGAGGCAGAAGGAGAAATAGTTAGGATCAAGGATGACGAAAGGAAAGCTTTATCCCTAGTGAAAGAAGCCACCGAATATTTCCATGGCGACGCTGCGAAGGAGGAAGCTCATCCCTTCCGAATCTTCATGATCGTTCGAGATTTCCTAACGATATTAGATCAAGTATGCAAGGAAGTCAAGAGAATGCAGGATGGGGTAATGGTGGGTGCTGCAAGATCCTTTCGTATATCGGCAACAGCCTCGCTCCCAGTCCTCAGCAGATACAATATCAAACACAACGAAAGCTCGGGCGAGGATAGCTCATCGCCTTGA 2721 48.18 MRVSPLSLRFFISLLSFFSAGFAFVADSGISSRRILHQPLFPVGSEPPPDIDLTPPPPPPTPDSPSVDQPFFHELPTSPDQSQSSPSTSNGTMPIPAATAQQSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGSNPERFVEDSRAPPSSFFYLGTVEPSQSSVIEQNGVNGANSSPYRKLNSIKMSDRYRPSPELQPLPPLQKPVVAMSPPAVFSSDDESQNTVFHTPQRTSVISHDDGFFSPASRRSNSVKSCSTASFKNEHMNSNPPPIPHSKRTSPKSRFSASSTKRNSSQPQPPPPPPLPPLRPVDDVRESPNSKETVPFSSTRPKFSKPPPPPNLALLQTISSSATFPQVPKPAAAPPPPPPPPPPPPRPPPHPVSYSTPQKLGLPVTRMAAVAPPDSSKSLSYSTARLNSSSKSTPISAPENSAKEDAVQRINSMDRLEADDTEGSKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSAPKEASRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDSSKLGTAERFLKAVLEVPFAFRRVEAMLYRANFDSEVKYLRKSFQTLEGASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKSFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSSSDNLQPRTQSKIEDEFRKQGLQVVAGLSRDLSNVKNAAGMDSDVLSSYVTKLEMGLEKVRMVLQFEKPGMQGKFFDSMKTFLKEAEGEIVRIKDDERKALSLVKEATEYFHGDAAKEEAHPFRIFMIVRDFLTILDQVCKEVKRMQDGVMVGAARSFRISATASLPVLSRYNIKHNESSGEDSSSP 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3459637 3464431 - Sed0019863.1 Sed01g0454 699758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0454 906 SMART it6_source 460 870 IPR015425 -
Sed01g0454 906 MobiDBLite consensus disorder prediction 41 103 - -
Sed01g0454 906 MobiDBLite consensus disorder prediction 228 306 - -
Sed01g0454 906 Pfam Formin Homology 2 Domain 463 855 IPR015425 -
Sed01g0454 906 ProSiteProfiles Formin homology-2 (FH2) domain profile. 460 881 IPR015425 -
Sed01g0454 906 Gene3D Formin, FH2 domain 454 867 IPR042201 -
Sed01g0454 906 MobiDBLite consensus disorder prediction 417 441 - -
Sed01g0454 906 SUPERFAMILY Formin homology 2 domain (FH2 domain) 377 866 - -
Sed01g0454 906 MobiDBLite consensus disorder prediction 42 66 - -
Sed01g0454 906 PANTHER FORMIN-RELATED 14 890 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Sed01g0454 906 MobiDBLite consensus disorder prediction 307 323 - -
Sed01g0454 906 MobiDBLite consensus disorder prediction 225 400 - -
Sed01g0454 906 MobiDBLite consensus disorder prediction 412 449 - -
Sed01g0454 906 MobiDBLite consensus disorder prediction 75 103 - -
Sed01g0454 906 MobiDBLite consensus disorder prediction 370 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0454 Sed-Chr1:3459637 Sed06g0275 Sed-Chr6:2340117 6.30E-138 dispersed
Sed01g0454 Sed-Chr1:3459637 Sed01g4182 Sed-Chr1:70429283 2.20E-138 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0454 K28090 - csv:101208011 1366.29