Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0460 ATGGATACCTTGTTCAAGCTTGTCTCTAATTCTGATCAATCTTACAACTCAAGTAGCAGCTCAAGGAATTCTGGTGATCTAAATCAATATTACTATCTTCATCAGCCACAACCTGAAGAATGCTTCAACAGCTTCTTCATGGAGGATGAAGATCATTTCTCTGCATCCTCTTCTTCCAATAATCATCGTCGTCGTCGTCGCCGTTCCGATCAACTCCAGCAGTTTCATTGTTCTACAGCCACCACCGCTAGTACTACTACAACTGGTACTACTACTCGGGCTGATCAATCGCTCTCCCCCTTCATCGAAGACTCAAACTTCGAATTCTCCAACGAATGGGCCTCCACATTACTCCTCAAAACAGCCACCGCCATCATCGAAAACAACTCTTCACAAATCCAACAACTAATGTGGATACTCAACGAGCTTGGCTCACCCTATGGCAACAAGGATCAAAAGCTAGCTTTCTACTTTCTCCAAGCCATGTTTAGCCGCATCACCGACTCAGGTGACCGGTGCTACCAAACCCTAGCAGCGGTATCGGAGAATCGGTCGTGTTTCAAGTCGATGAGAAGAGTGGTGATGAAGTTTCAGGAGGTGAGTCCATGGATGACATTTGGTCATGTGGCTTCAAATGGTGCAATTTTGGAGGCTTTTGAAGGAGAAACGAAGTTGCATATTATTGATATTAGCAACTCTTTTTGCACTCAATGGCCAACTTTTTTGGAAGCTCTTGCAACAAAGTCAGCTCAAACTCCCCACCTCAGGCTAACCACTATAATCGCTGCAAAATCAGATGGGAGCTTACGAGTTCATAAGAATATGATGAAAGAAATTAGCACAAGAATGGAGAAATTCGCCAGGCTGATGGGGGTTCCCTTCAAATTCAAATCAATATTTCACTCCGGCGACATTTCCGACATCAATTTCACGGAATTAGGCGTCAACCACGACGAAGCCGTCGCCGTCAACTGCATCGGCGCGTTACGCTCCGCCGCGCCGGTCGGGAACCGCCGCGATTTTCTCCTATCGCAGTTCGGAGCTTTGCGGCCGAGGATAATCACGGTGGTGGAGGAAGAGGCGGATCTCGACGGCGACGGCGACGGCGGCGTTCATTTCGTCAAAGACGTTGAAGAGTGTTTGCGATGGTTTAGGGTTTACTTCGATTCGTTGGACGGAAGTTTCTCAGCGGCCAGCGACGAGAAATTGATGCTCGAACGCGCCGCCGGACGCGCCGTCGTGGACTTACTGGCGCGTGCGCCAGCGGAGTCTGTTGAGAGGCGGGAGACGGCGGCGCGTTGGGCGCGTCGTCTGGATGTCGGTGGTTTCAGTCCGGTGTCGTTTAGCGAGGATGTAATTGATGATGTACGAACGCTTTTGAGGAGGCATAAGGACGGGTGGTCGGTGACGGAGAATGGAGTAGGCGACGGCGCCGGTGCCGGAATATTCTTAACTTGGAACAGGCAGCCGATGGTTTGGGCCGCCGCGTGGGCCCCGAACTAA 1503 50.37 MDTLFKLVSNSDQSYNSSSSSRNSGDLNQYYYLHQPQPEECFNSFFMEDEDHFSASSSSNNHRRRRRRSDQLQQFHCSTATTASTTTTGTTTRADQSLSPFIEDSNFEFSNEWASTLLLKTATAIIENNSSQIQQLMWILNELGSPYGNKDQKLAFYFLQAMFSRITDSGDRCYQTLAAVSENRSCFKSMRRVVMKFQEVSPWMTFGHVASNGAILEAFEGETKLHIIDISNSFCTQWPTFLEALATKSAQTPHLRLTTIIAAKSDGSLRVHKNMMKEISTRMEKFARLMGVPFKFKSIFHSGDISDINFTELGVNHDEAVAVNCIGALRSAAPVGNRRDFLLSQFGALRPRIITVVEEEADLDGDGDGGVHFVKDVEECLRWFRVYFDSLDGSFSAASDEKLMLERAAGRAVVDLLARAPAESVERRETAARWARRLDVGGFSPVSFSEDVIDDVRTLLRRHKDGWSVTENGVGDGAGAGIFLTWNRQPMVWAAAWAPN 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3513089 3516633 + Sed0013160.1 Sed01g0460 699764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0460 500 Pfam GRAS domain family 116 497 IPR005202 -
Sed01g0460 500 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 80 497 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
Sed01g0460 500 ProSiteProfiles GRAS family profile. 105 498 IPR005202 -
Sed01g0460 500 MobiDBLite consensus disorder prediction 1 22 - -
Sed01g0460 500 MobiDBLite consensus disorder prediction 53 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0460 Sed-Chr1:3513089 Sed10g0719 Sed-Chr10:5020101 2.40E-147 dispersed
Sed01g0460 Sed-Chr1:3513089 Sed14g0906 Sed-Chr14:18007399 4.70E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37109 PF03514 GRAS 2.10E-95 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0460 K27743 - csv:101210294 623.624