Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0473 ATGGACGACATCGACATTATGAAATCGACACTATCCCCGTCCGACCAAATCGACATGTCGTCCACACTCCTCCTCAACGACTACAACAACAACAACAATCCCCACTACCCATCTCCCCCCTTATTCAGCTCCGACTTCTCGCCAATCCCCTTCTTCCCCGACCCCCCGCTGTCCCGCCACAAGCGCACCGGCTCGGGAATGGCAGCAATGAGAGAAATGATATTTAGAATAGCGGCAATGCAGCCCATACAGATAGATCCCGAGGCAATAAAGGCGCCAAAGAGGCGCAACGTGAGGATCTCGAAGGACCCGCAGAGCGTAGCGGCACGGCACCGAAGGGAGAGGATCAGCCAGAAGATGAGGATCCTGCAGCGGCTCGTCCCGGGCGGAACGAAGATGGACACGGCGTCGATGCTGGACGAGGCCGTTCATTATGTCAAGTTCTTGAAGAGGCAAGTGCAAACGCTGGAACAGGCTGGCTTTCATAACAATAATTATAATCAAACCAGTTTTATGAATTGTGCCAATCTTGCTTATTCTTCTGCGCTTTTGAATGCTTGCCAAATTATGCCTCACAATTCAACTATGGCTGCTAATTCTTTGCAAATGCATTGA 615 51.06 MDDIDIMKSTLSPSDQIDMSSTLLLNDYNNNNNPHYPSPPLFSSDFSPIPFFPDPPLSRHKRTGSGMAAMREMIFRIAAMQPIQIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKMRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNNNYNQTSFMNCANLAYSSALLNACQIMPHNSTMAANSLQMH 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3643380 3643994 + Sed0024863.1 Sed01g0473 699777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0473 204 CDD bHLH_AtIND_like 101 157 - -
Sed01g0473 204 Pfam Helix-loop-helix DNA-binding domain 109 150 IPR011598 GO:0046983(InterPro)
Sed01g0473 204 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 161 IPR036638 GO:0046983(InterPro)
Sed01g0473 204 FunFam BHLH transcription factor 103 167 - -
Sed01g0473 204 Coils Coil 139 159 - -
Sed01g0473 204 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 149 IPR011598 GO:0046983(InterPro)
Sed01g0473 204 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 15 194 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g0473 204 Gene3D - 99 171 IPR036638 GO:0046983(InterPro)
Sed01g0473 204 SMART finulus 106 155 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0473 Sed-Chr1:3643380 Sed10g1240 Sed-Chr10:26677131 7.00E-37 dispersed
Sed01g0473 Sed-Chr1:3643380 Sed13g1761 Sed-Chr13:22619005 2.20E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37110 PF00010 HLH 2.60E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0473 - - - 0.0