Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0473 | ATGGACGACATCGACATTATGAAATCGACACTATCCCCGTCCGACCAAATCGACATGTCGTCCACACTCCTCCTCAACGACTACAACAACAACAACAATCCCCACTACCCATCTCCCCCCTTATTCAGCTCCGACTTCTCGCCAATCCCCTTCTTCCCCGACCCCCCGCTGTCCCGCCACAAGCGCACCGGCTCGGGAATGGCAGCAATGAGAGAAATGATATTTAGAATAGCGGCAATGCAGCCCATACAGATAGATCCCGAGGCAATAAAGGCGCCAAAGAGGCGCAACGTGAGGATCTCGAAGGACCCGCAGAGCGTAGCGGCACGGCACCGAAGGGAGAGGATCAGCCAGAAGATGAGGATCCTGCAGCGGCTCGTCCCGGGCGGAACGAAGATGGACACGGCGTCGATGCTGGACGAGGCCGTTCATTATGTCAAGTTCTTGAAGAGGCAAGTGCAAACGCTGGAACAGGCTGGCTTTCATAACAATAATTATAATCAAACCAGTTTTATGAATTGTGCCAATCTTGCTTATTCTTCTGCGCTTTTGAATGCTTGCCAAATTATGCCTCACAATTCAACTATGGCTGCTAATTCTTTGCAAATGCATTGA | 615 | 51.06 | MDDIDIMKSTLSPSDQIDMSSTLLLNDYNNNNNPHYPSPPLFSSDFSPIPFFPDPPLSRHKRTGSGMAAMREMIFRIAAMQPIQIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKMRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNNNYNQTSFMNCANLAYSSALLNACQIMPHNSTMAANSLQMH | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3643380 | 3643994 | + | Sed0024863.1 | Sed01g0473 | 699777 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0473 | 204 | CDD | bHLH_AtIND_like | 101 | 157 | - | - | |
Sed01g0473 | 204 | Pfam | Helix-loop-helix DNA-binding domain | 109 | 150 | IPR011598 | GO:0046983(InterPro) | |
Sed01g0473 | 204 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 104 | 161 | IPR036638 | GO:0046983(InterPro) | |
Sed01g0473 | 204 | FunFam | BHLH transcription factor | 103 | 167 | - | - | |
Sed01g0473 | 204 | Coils | Coil | 139 | 159 | - | - | |
Sed01g0473 | 204 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 100 | 149 | IPR011598 | GO:0046983(InterPro) | |
Sed01g0473 | 204 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 15 | 194 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g0473 | 204 | Gene3D | - | 99 | 171 | IPR036638 | GO:0046983(InterPro) | |
Sed01g0473 | 204 | SMART | finulus | 106 | 155 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0473 | Sed-Chr1:3643380 | Sed10g1240 | Sed-Chr10:26677131 | 7.00E-37 | dispersed | |
Sed01g0473 | Sed-Chr1:3643380 | Sed13g1761 | Sed-Chr13:22619005 | 2.20E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37110 | PF00010 | HLH | 2.60E-06 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0473 | - | - | - | 0.0 |