Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0475 ATGGGAATAATGTTGCTGGATTTTTCCCTACTTCTCAACTGGATTTTTTTCAGATTGAAAAACCGTAAGCTCTCTTGTGCTTCACTCACTACTACGGAATCTCTTAAAGATCTCTACAAAAAAATGTTCCAGCCAAGTATTTTTGACGATGGTAAGCTCCTCCCCTTAGACATGCCTCAACACACTTCCGAAAGCGACCTCGTTCGGATCCGAGACAATGACTTCGACAGCGCTACTAAATCCAGCACCGACAACAACCTTGAACTCGTCTCGGGAGACGACCAAGACCCCCGTCCGAAAAAGAAGCGTTATCATCGCCATACCCAACATCAGATCCAAGAAATGGAAGCGTTTTTCAAGGAGTGTCCTCACCCTGATGACAAACAAAGGAAGGAGTTGAGTAGGGAATTAGGGTTAGAGCCGTTGCAAGTCAAATTTTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAGCATGAGCGCCTTGACAACACTCAGCTTCGAACAGAAAATGAGAAGCTTAGAGCTGATAACATGAGATATAGAGAAGCCCTTAGCAATGCTTCGTGCCCTAATTGCGGTGGCCCTACCGCTATCGGTGAAATGTCCTTTGATGAACATCATCTAAGACTCGAAAATGCCCGTCTCCGCGAAGAGATCGATCGCATTTCAGCAATAGCCGCAAAATACGTGGGGAAGCCAGTAGTGAACTACCCTCTACTTTCTCCACCAGTTCCATCTCGCGCACTAGATCTCGGAATGGGCAACTTTGGGCCACAACCAGACCTCGGAGGAGACATGTACGGGTCGGCGAGCGACCTTATCCGATCCATCAGTGCCCCGACGGAGGCCGATAAGCCGATAATCATCGAGCTGGCAGTTGCAGCCATGGAAGAGTTGACTAGAATGGCTCAAATGGGTGAGCCGTTGTGGATGAGTAGCCTTGATGGGTCCACTAATGTGCTGAATGAAGATGAGTACTTGAGAACATTTCCTAGAGGCATTGGGCCGAAGCCAACAGGGTTTAAATGTGAAGCTTCTCGTGAATCTGCTGTTGTTATTATGAATCACATTAACCTTGTTGAAATTCTCATGGACGTGAATCAATGGTCGACATTGTTTTCTGGAATTGTGTCTAGAGCTATGACACTTGAAGTGTTGTCAACCGGAGTAGCTGGAAATTACAATGGAGCCTTGCAAGTGATGACATCAGAATTTCAAGTTCCATCGCCACTAGTTCCTACTCGGGAGAGCTACTACGTTCGATATTGCAAGCAGCACGGGGACGGGACATGGGCAGTGGTGGATGTTTCATTGGACGATCTTCGCCCTACCCCTGGACTTCGGTGCCGAAGAAGACCCTCGGGTTGTTTGATCCAAGAAATGCCAAATGGTTATTCAAAGGTTACATGGGTTGAACATGTTGAGATTGATGATAGAGGAGTTCATAACCTTTACAAGCAGCTGGTCAGCTCTGGCCAAGCCTTTGGAGCCAAACGTTGGGTTACAACTTTAGATCGCCAATGTGAACGCCTAGCCAGTGCCATGGCAACCAACATACCAACCGTTGATGTTGGAGTGATAACAAATCAAGAAGGGAGAAAGAGCATGTTGAAGCTGGCTGAGAGAATGGTGATAAGCTTCTGTGCTGGAGTGAGCGCCTCCACCACCCACACATGGACTACTCTGTCAGGTACGGGCGCTGACGATGTTCGGGTCATGACCCGAAAGAGCATCGATGACCCGGGAAGACCCCCTGGTATTGTCTTGAGTGCTGCAACTTCCTTTTGGCTCCCTGTTCCTCCCAAGAGAATCTTCGATTTTCTTCGAGATGAAAACTCTCGTAACGAGTGGGATATTCTTTCGAACGGTGGGATAGTTCAAGAAATGGCACACATCGCGAACGGCCGCGACACCGGCAACTGCGTTTCTCTTCTGCGTGTAAATAGCTCGAATTCAAGTCAAAGTAACATGCTAATCCTGCAAGAGAGCTGCACAGACGCAACAGCCTCATTCGTGATCTACGCCCCCGTCGACATCGTCGCAATGAACCTAGTCCTCAACGGCGGTGACCCCGACTACGTTGCACTTCTCCCCTCGGGGTTCGCCATTCTCCCGGATGGCAGCGAGAGCGTCTCGGGGGGGTCCCTGCTGACAGTAGCATTTCAGATTCTGGTGGATTCGGTTCCAACGGCCAAACTGTCACTCGGGTCGGTTGCAACGGTTAACAACTTGATTGCGTGTACGGTTGAGAGGATTAAAGCATCATTATCATGTGAAACTGCGTAA 2289 48.62 MGIMLLDFSLLLNWIFFRLKNRKLSCASLTTTESLKDLYKKMFQPSIFDDGKLLPLDMPQHTSESDLVRIRDNDFDSATKSSTDNNLELVSGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERLDNTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPSRALDLGMGNFGPQPDLGGDMYGSASDLIRSISAPTEADKPIIIELAVAAMEELTRMAQMGEPLWMSSLDGSTNVLNEDEYLRTFPRGIGPKPTGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYYVRYCKQHGDGTWAVVDVSLDDLRPTPGLRCRRRPSGCLIQEMPNGYSKVTWVEHVEIDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNIPTVDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRIFDFLRDENSRNEWDILSNGGIVQEMAHIANGRDTGNCVSLLRVNSSNSSQSNMLILQESCTDATASFVIYAPVDIVAMNLVLNGGDPDYVALLPSGFAILPDGSESVSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCETA 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3672719 3679164 + Sed0000306.2 Sed01g0475 699779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0475 762 Gene3D - 90 175 - -
Sed01g0475 762 ProSitePatterns 'Homeobox' domain signature. 133 156 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed01g0475 762 SMART START_1 291 511 IPR002913 GO:0008289(InterPro)
Sed01g0475 762 FunFam Homeobox-leucine zipper protein HDG1 88 174 - -
Sed01g0475 762 FunFam Homeobox-leucine zipper protein GLABRA 2 291 510 - -
Sed01g0475 762 Pfam Homeodomain 101 157 IPR001356 GO:0003677(InterPro)
Sed01g0475 762 SUPERFAMILY Bet v1-like 282 513 - -
Sed01g0475 762 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 93 760 IPR042160 -
Sed01g0475 762 Coils Coil 157 184 - -
Sed01g0475 762 ProSiteProfiles 'Homeobox' domain profile. 98 158 IPR001356 GO:0003677(InterPro)
Sed01g0475 762 MobiDBLite consensus disorder prediction 78 107 - -
Sed01g0475 762 SUPERFAMILY Homeodomain-like 89 158 IPR009057 -
Sed01g0475 762 CDD homeodomain 101 159 IPR001356 GO:0003677(InterPro)
Sed01g0475 762 ProSiteProfiles START domain profile. 282 514 IPR002913 GO:0008289(InterPro)
Sed01g0475 762 CDD START_ArGLABRA2_like 286 510 - -
Sed01g0475 762 Gene3D - 342 510 IPR023393 -
Sed01g0475 762 SMART HOX_1 99 162 IPR001356 GO:0003677(InterPro)
Sed01g0475 762 SUPERFAMILY Bet v1-like 530 754 - -
Sed01g0475 762 Pfam START domain 292 511 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0475 Sed-Chr1:3672719 Sed05g3070 Sed-Chr5:40988413 0.00E+00 dispersed
Sed01g0474 Sed-Chr1:3672719 Sed01g0475 Sed-Chr1:3672719 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37112 PF01852 START 1.50E-58 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0475 K09338 - csv:101214763 1330.47