Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g0478 | ATGGAGGTGTTTTTGATTTGGAGAAGTAGCCATTGGGTCAAAACCAGAATTCTGCTCTTTGCATTGTTCTTTGGGATGTGGATGCCTTTGGGAGTCATTGGCGTCTCTCGAAACACAAGCGTTCCGTCTTCGAATCCAAGAGTGTTGAACATTGGAGTTCTGTTCACTCTCGACTCGGTTATTGGAAGTTCTGCACAGCCTGCGATTTTAGCTGCTGTGGACGATGTCAATGCAGATAGCAGTATTCTTCCTGGAACAAAGCTGAATATGATCTTACATGACACAAATTGCAGTGGATTTCTAGGAACTGTGGAAGCCTTGCAGCTGATGGAAGATGAAGTAGTTGCTGCTGTTGGGCCGCAATCTTCGGGCATCGCTCACGTCATTTCTCATATTATCAATGAACTCCACATACCACTTCTGTCATTTGGTGCTACAGATCCTACTTTATCTGCATTACAATATCCATATTTCGTTCGGACCACACAAAGTGATTACTTTCAAATGAATGCAATTGCTGATATAATAGATTTTTTTGGATGGAGAGAGGTCATTGCCATCTTTGTAGATGATGATTATGGCAGAAGCGGGATATCGGCATTGAGCGATGCGTTGGCAAAGAAGCGAGCGAGGATCTCTTATAAGGCCGCCTTCTCTCCTGGATCCCCCACCAACGTGATAAGCGACTTGTTGATTTCAATAAACCAAATGGAATCCCGGGTGTATATTGTACATGTCAACCCCGACTCTGGTTTATCAATATTTTCAGCTGCTAAGAAACTTCAGATGTTGAACAGTGGCTATGTCTGGATTGCAACTGATTGGCTTCCTTCTTTTCTTGACACTTTTGAAACAAGTCCTGATGTAATGAATCAGTTACAAGGGGTTGTTGCTCTTCGCCACCACACCCCCAACAGCGATCTGAAGAGAAACTTTGTCTGGAAATGGAAGAATCTAAAATACAAGAAGAGTAGAAACTTCAACTCCTATGCACTCTATGCATATGACTCTGTTTGGTTAGCGGCCCGTGCTCTTCACACATTCTTTGAAGAAGGTGGCAATATATCTTTTTCTAGTGACCCAAAGTTACATGAAAACAATAGAAGCTTGCTGCACTTAACATCACTTCGAGTTTTTAATGGCGGCGAACAGCTTCTACAGACAATTAAGAGAACGAACTTCACAGGTGTAAGTGGGCGGATTCAATTCGGCGATGACAGAAATTTTATTCATCCAGCCTATGATATCCTGAACATCGGTGGAACTGGCTTGCGTAGAATTGGATACTGGTCAAATTATTCGGGACTATCGACTATTGCACCAGATAACATAAATCCAAAGCCTCTTAATGCTTCCCCAAATAACCATCTCTACAGTGTGATATGGCCAGGTGAAGTAACAACCGTTCCTCGAGGATGGGTGTTCCCGCATAACGGGAAACCGTTGCAAATTGTAGTACCTAACCGTGTGAGTTACAAAGCCTTTGTGTCTAAAGACAAGAACCCTCCAGGAGTTAAAGGATTTTGTATAGATGTCTTTGAAGCTGCCATAAGCTTGTTGCCTTATCCAGTTCCTCACACATATATATTATATGGAGATGGAAAGGACACTCCTGTGTACAACAATCTTGTATATGAAGTTTCACAGAATAAATACGATGCAGCTGTCGGTGATATCACGATTGTAACGAATAGGACAAAGATTGTGGACTTCACGCAACCATTTATGGAGTCGGGACTCGTCGTAGTTACTGTTGTCAAGGAGGAGAAGTCCAGTCCGTGGGCATTTCTCAGGCCGTTTACAGTTCAAATGTGGGCTGTTACTGCAATATTCTTCATTTTTGTTGGAGCAGTTGTTTGGATTCTCGAGCACCGGACTAATGAAGAGTTTCGTGGTCCACCAAGGCAACAACTAATGACAATATTTTGGTTTAGTTTCTCGACGATGTTCTTTTCTCACAAGGAAAACACTGTAAGCACCCTCGGTCGGATGGTGTTGATAATATGGCTCTTCGTTGTATTAATTATCAATTCGAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTTCAGCAGCTAACGTCAAAGATCGAAGGGATTGATAGCTTAATCTCTAGCGTAGATGCTGTTGGTGTTCAGGAAGGGTCATTTGCATTGAATTATCTAATTGATGAGCTGAATATACCAGCATCTCGGATCATTAAGTTGAAAGATCAGGAGGAATATGTTGATGCTCTTCGGCGTGGACCTGCAAATGGCGGGGTAGCTGCCATCGTAGACGAGCTTCCTTACGTTGAGCTTTTCTTGTCTGGCACTAATTGCGTGTTCAGAACGGTTGGACAAGAGTTTACCAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCAGTTGATTTGTCAACAGCCATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAAGATCCACGACAAATGGCTCTCACGAACCGAGTGTTCGATGAGCCTCAACCAAGTCGACGTAAACCAACTGTCACTGAGTAGCTTTTGGGGATTGTTTCTAATTTGTGGCATTGCCTGCTTTGGTGCTCTTTTGATATTCTTCTTTAGAGTGCTATTTCAATACCGAAAATCTACCCCAGAAAGCCAGCCTGAAGTCGACGAGGCCGAACCTGTTAGGACGAGACGTCTTAGTCGTACAACAAGCTTCATGCACTTTGTAGATCAAAGAGAAGTCAAAAAGCCTAAAAGAAAGTCCATTGATACCAAACAAGCAAGTCAAAGCTTGGAGGGCCACCCTGATTCACCACCTCATTAG | 2805 | 43.1 | MEVFLIWRSSHWVKTRILLFALFFGMWMPLGVIGVSRNTSVPSSNPRVLNIGVLFTLDSVIGSSAQPAILAAVDDVNADSSILPGTKLNMILHDTNCSGFLGTVEALQLMEDEVVAAVGPQSSGIAHVISHIINELHIPLLSFGATDPTLSALQYPYFVRTTQSDYFQMNAIADIIDFFGWREVIAIFVDDDYGRSGISALSDALAKKRARISYKAAFSPGSPTNVISDLLISINQMESRVYIVHVNPDSGLSIFSAAKKLQMLNSGYVWIATDWLPSFLDTFETSPDVMNQLQGVVALRHHTPNSDLKRNFVWKWKNLKYKKSRNFNSYALYAYDSVWLAARALHTFFEEGGNISFSSDPKLHENNRSLLHLTSLRVFNGGEQLLQTIKRTNFTGVSGRIQFGDDRNFIHPAYDILNIGGTGLRRIGYWSNYSGLSTIAPDNINPKPLNASPNNHLYSVIWPGEVTTVPRGWVFPHNGKPLQIVVPNRVSYKAFVSKDKNPPGVKGFCIDVFEAAISLLPYPVPHTYILYGDGKDTPVYNNLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKEEKSSPWAFLRPFTVQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLMTIFWFSFSTMFFSHKENTVSTLGRMVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSVDAVGVQEGSFALNYLIDELNIPASRIIKLKDQEEYVDALRRGPANGGVAAIVDELPYVELFLSGTNCVFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQVDVNQLSLSSFWGLFLICGIACFGALLIFFFRVLFQYRKSTPESQPEVDEAEPVRTRRLSRTTSFMHFVDQREVKKPKRKSIDTKQASQSLEGHPDSPPH | 934 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 3688822 | 3694261 | - | Sed0008000.2 | Sed01g0478 | 699782 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g0478 | 934 | Gene3D | - | 592 | 719 | - | - | |
| Sed01g0478 | 934 | PIRSF | IGluLR_plant | 13 | 932 | IPR017103 | - | |
| Sed01g0478 | 934 | Gene3D | - | 164 | 436 | - | - | |
| Sed01g0478 | 934 | FunFam | Glutamate receptor | 719 | 827 | - | - | |
| Sed01g0478 | 934 | FunFam | Glutamate receptor | 477 | 593 | - | - | |
| Sed01g0478 | 934 | SUPERFAMILY | Periplasmic binding protein-like I | 43 | 474 | IPR028082 | - | |
| Sed01g0478 | 934 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 62 | 78 | - | - | |
| Sed01g0478 | 934 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 122 | 150 | - | - | |
| Sed01g0478 | 934 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 334 | 346 | - | - | |
| Sed01g0478 | 934 | MobiDBLite | consensus disorder prediction | 905 | 934 | - | - | |
| Sed01g0478 | 934 | MobiDBLite | consensus disorder prediction | 905 | 919 | - | - | |
| Sed01g0478 | 934 | FunFam | Glutamate receptor | 593 | 723 | - | - | |
| Sed01g0478 | 934 | Gene3D | - | 68 | 411 | - | - | |
| Sed01g0478 | 934 | Pfam | Receptor family ligand binding region | 65 | 421 | IPR001828 | - | |
| Sed01g0478 | 934 | SUPERFAMILY | Periplasmic binding protein-like II | 458 | 824 | - | - | |
| Sed01g0478 | 934 | Gene3D | - | 720 | 827 | - | - | |
| Sed01g0478 | 934 | Pfam | Ligand-gated ion channel | 602 | 856 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
| Sed01g0478 | 934 | CDD | GluR_Plant | 480 | 823 | - | - | |
| Sed01g0478 | 934 | CDD | PBP1_GABAb_receptor_plant | 50 | 437 | IPR044440 | - | |
| Sed01g0478 | 934 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 50 | 913 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
| Sed01g0478 | 934 | SMART | GluR_14 | 483 | 825 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
| Sed01g0478 | 934 | Gene3D | - | 476 | 591 | - | - | |
| Sed01g0478 | 934 | PRINTS | Metabotropic glutamate GPCR signature | 62 | 77 | IPR000337 | GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro) | |
| Sed01g0478 | 934 | PRINTS | Metabotropic glutamate GPCR signature | 184 | 201 | IPR000337 | GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro) | |
| Sed01g0478 | 934 | PRINTS | Metabotropic glutamate GPCR signature | 168 | 184 | IPR000337 | GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro) | |
| Sed01g0478 | 934 | FunFam | Glutamate receptor | 164 | 326 | - | - | |
| Sed01g0478 | 934 | Pfam | Ligated ion channel L-glutamate- and glycine-binding site | 503 | 584 | IPR019594 | GO:0015276(InterPro)|GO:0016020(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g0478 | Sed-Chr1:3688822 | Sed05g0892 | Sed-Chr5:7163067 | 0.00E+00 | dispersed | |
| Sed01g0477 | Sed-Chr1:3688822 | Sed01g0478 | Sed-Chr1:3688822 | 0.00E+00 | tandem | |
| Sed01g0478 | Sed-Chr1:3688822 | Sed01g0479 | Sed-Chr1:3708120 | 2.60E-248 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g0478 | K05387 | - | csv:101215485 | 1622.06 |