Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0479 ATGGAGAGCTTATTAATTCCTACATTGATTGCTTTGATATGGGCATTTCTTGCTGGTTCTGTATGTTGCCAAAGGCCTGCAGTTGTGAACGTTGGTGCAGTTTTCACTTTTGATTCAGTTATAGGAAGAGCAGCAAAGTTGGCAATGGAAGCTGCAGTTTCAGATGTTAATGCGGATCCTTCCATTCTCAATGGAACGAAGCTTAATTTGGTCATGACAGATACTCATTGCAATGTTCTCTTGGGTTCTATTGGAGCTTTCCGTGTTCTTGAGAAAGACGTAGTAGCCATCGTTGGGCCTCAATCTTCAGTCGTAGCTCATATGGCTCTACAGATTGCTAATAATCTCCAAGTTCCTCTTATATCATATGCTGCCACTGATCCAACTTTATCTGCTCTCCAATTCCCCTTTTTCCTACGGACTACTCAGAGTGATTCCTATCAAATGGCAGCTTTGGCTGAATTAATTGACTTTTATGAGTGGAAAGAGGTGATCACGATCTTTGTTGATGACGATTACGGTAGAAATGGAATATCCACTTTAACTGATGAACTTGACAAGAAGATGTTTAAAATTTCTTACAAAATACCCTTACCTTCTCAGTTTAATCTCAGTGAAATCAAGGACATACTCAATAAGTCCAAGTTACTTGGTCCTCGTGTCTATGTTGTTCATGTCAATCCTGATCCTAAATTAAGTATCTTCAAAATAGCTCATCAACTTAATATGATGACAAGTGATTATGTGTGGCTGGCAACAGATTGGCTTTCTACTACCTTAGATTCAATTCTGCCCACGAACCAAGCTGCTTTAAACATTCTTCAAGGAGTGGTTGTATTTCGTCAACATACTCCTGAATCCAGCCGAAAAACAGCATTATGGTCTCGGTTAAGGAAGATGCTGCCCGAAGGCTCCACAAATTCTTCATTGAATGTCTATGCTCTTAGTGCCTATGATACCATTCAAGTAGTTGCTCGTTCAATCGATAAATTTCTTAATGAAGGTAGGAGCATTACCTTCTCTCTGAAGAGCAAGTTTCATGATTCAAATACTACTAAAACCTCCTGGGGGAAGCTCAAAATATTTGATGATGGTGCTCTTCTTTTGAGCATATTGTTGCAGACAAAATTCACTGGCGTAAGTGGTCAGATTGAGTTCAATTCAGATCGAAATATCGTCAGTAGAGGCTATGAGGTGATCAATATCGATCAGACGGGATTGCGTACTGTTGGTTATTGGTCTAATAACACGGGCTTTACAATCCAATCGCCTGAAATTCTGAAACAAAAACAAATTAGTTATACTCACCTGAACCAGACTCTTGGCGATGTTACCTGGCCTGGTGGAAAGACAGCAAGACCGCGTGGATGGGTTATTGCAGACAATGAAAGACCATTGCTAATTGGAGTGCCACTTAGGGTAAGTTTCATTGATTTTGTTACAGTGATCGATGGAAGCGACAAAAACATCGAAGGATATTGTATTGATCTGTTCAAGGAAGCAAGAAAACTGGTCCCATACGATGTTCCTTACAGATTTATTCCTTTTGGAGATGGCTACTCCAATCCTAGCTATAATGGCCTTGTGAAGAACGTTGCAAATGGTATCTTTGATGCAGCTGTGGGAGATATTGCAATTGTAACAAATCGCACAAGGATTGTGGATTTTTCTCAGCCTTTTGCTTCTACCGGTCTTGTTATTGTGGCTCCAATAAAAAATTCAAAGTCAAATGCTTGGGTCTTTCTTAAACCATTTACGGTAGAGATGTGGTGTGTTACCTCAGCGTCCTTTTTTATGATTGGCGCAGTCATATGGCTTCTCGAGCATCGAGTAAATGATGATTTCCGTGGTCCACCAAAGAGGCAGCTAGTGACAGTACTACTCTTCAGCTTCTCAACATTGTTCAAAACAAATCAGGAAGCCACTGTCAGTCCACTTGGACGTATGGTAATGGTAGTGTGGCTTTTCTTATTGATGGTTATCACATCAAGCTATACGGCCAGTCTCACTTCAATCCTTACGGTTCAGCAACTTTCATCTCCCATTAAAGGACTTGATGACTTGATTACTAGTGAACAGCCAATTGGCTATCAGGTAGGATCGTTTGCATTTAGCTATCTGACCGAGAGCCTTTACCTTCCACGATCGAGGCTTGTATCTCTCGGCTCTCCAGAAGAGTATGAATCAGCACTGTTGAAGGGGCCATTAAAAAAAGGAGGGGTTGCAGCTATTGTAGATGAACTTCCATATATGGAGTTATTCATATCAGGGAGGAACGATTTCGGAATGATCGGGCAGCCATTCACCAAGAGTGGATGGGGATTTGCTTTTCAGAGAGGATCTCCACTTGCTGTAGACATTTCAACTGCAATTCTAAAGCTTTCTGAGAATGGAAAGCTTCAGCAGCTCCATGAGAAGTGGTTTTGCAAGATGGGTTGTCCTGGAGAGAGGAGAGGGAAATCTGAGCCTAACCAACTCCACTTGGTCAGCTTCTGGGGTCTATATCTGTTATGCGGTGCCTTTTCACTCGCCGCTCTTCTTATATTTTTGCTCCGTATAGTTCGACAATTTGCTCGCTACATACGACAACAGAAGGAATCTTCTCATGCAGAGTTGGTATCATCAAATTCAAACTGGACTCAGGTTATATACAAGTTTATCGACTTTGTCGATGAGAAGGAAGAAGCCATTAAGAGACTTTTCAGAAAGAATGATACTCAGAATCAGATCTGTATTGAAAAGGCTTGA 2748 41.16 MESLLIPTLIALIWAFLAGSVCCQRPAVVNVGAVFTFDSVIGRAAKLAMEAAVSDVNADPSILNGTKLNLVMTDTHCNVLLGSIGAFRVLEKDVVAIVGPQSSVVAHMALQIANNLQVPLISYAATDPTLSALQFPFFLRTTQSDSYQMAALAELIDFYEWKEVITIFVDDDYGRNGISTLTDELDKKMFKISYKIPLPSQFNLSEIKDILNKSKLLGPRVYVVHVNPDPKLSIFKIAHQLNMMTSDYVWLATDWLSTTLDSILPTNQAALNILQGVVVFRQHTPESSRKTALWSRLRKMLPEGSTNSSLNVYALSAYDTIQVVARSIDKFLNEGRSITFSLKSKFHDSNTTKTSWGKLKIFDDGALLLSILLQTKFTGVSGQIEFNSDRNIVSRGYEVINIDQTGLRTVGYWSNNTGFTIQSPEILKQKQISYTHLNQTLGDVTWPGGKTARPRGWVIADNERPLLIGVPLRVSFIDFVTVIDGSDKNIEGYCIDLFKEARKLVPYDVPYRFIPFGDGYSNPSYNGLVKNVANGIFDAAVGDIAIVTNRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLKPFTVEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLVTVLLFSFSTLFKTNQEATVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITSEQPIGYQVGSFAFSYLTESLYLPRSRLVSLGSPEEYESALLKGPLKKGGVAAIVDELPYMELFISGRNDFGMIGQPFTKSGWGFAFQRGSPLAVDISTAILKLSENGKLQQLHEKWFCKMGCPGERRGKSEPNQLHLVSFWGLYLLCGAFSLAALLIFLLRIVRQFARYIRQQKESSHAELVSSNSNWTQVIYKFIDFVDEKEEAIKRLFRKNDTQNQICIEKA 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3708120 3715213 - Sed0004654.1 Sed01g0479 699783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0479 915 SUPERFAMILY Periplasmic binding protein-like II 442 808 - -
Sed01g0479 915 Gene3D - 478 577 - -
Sed01g0479 915 FunFam Glutamate receptor 144 298 - -
Sed01g0479 915 Gene3D - 144 418 - -
Sed01g0479 915 PIRSF IGluLR_plant 1 915 IPR017103 -
Sed01g0479 915 Gene3D - 738 815 - -
Sed01g0479 915 CDD GluR_Plant 464 808 - -
Sed01g0479 915 Pfam Ligated ion channel L-glutamate- and glycine-binding site 484 569 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed01g0479 915 SMART GluR_14 467 810 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed01g0479 915 Pfam Receptor family ligand binding region 45 403 IPR001828 -
Sed01g0479 915 FunFam Glutamate receptor 461 578 - -
Sed01g0479 915 Gene3D - 578 712 - -
Sed01g0479 915 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 871 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Sed01g0479 915 CDD PBP1_GABAb_receptor_plant 30 420 IPR044440 -
Sed01g0479 915 Gene3D - 47 394 - -
Sed01g0479 915 FunFam Glutamate receptor 578 708 - -
Sed01g0479 915 SUPERFAMILY Periplasmic binding protein-like I 22 457 IPR028082 -
Sed01g0479 915 FunFam Glutamate receptor 704 812 - -
Sed01g0479 915 Pfam Ligand-gated ion channel 587 839 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0479 Sed-Chr1:3708120 Sed05g2017 Sed-Chr5:33393657 0.00E+00 dispersed
Sed01g0478 Sed-Chr1:3688822 Sed01g0479 Sed-Chr1:3708120 2.60E-248 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0479 K05387 - csv:101215715 1607.42