Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0494 | ATGGACTGGACTAGACGCCACGTCATCGGCCACGGCTCCTCCGCCACCGTCTACCTCGCCGCCGCATCTCCCGCCGGCCACCTCTTTGCCGTCAAATCCGCCGAGATTTCTCGCTCGCAATCTCTTCAAAAAGAGCAAAAGATTCTTTCTTTATTAGCCTCTCCTTATGTAGTTTCTTATAAAGGATTTGAAATTCGTGAAGAACAAAATGGGGTCGTGAATTTCCATCTTTTTATGGAGTTTTTCCCCAACGGCTCCCTCGCGGACGTAATTCGCCGCCGTGGACGGCGGCCGGACGAGGCGGCGATCGGAATTTACACGAGGCAGTTACTTCACGGCCTGAATTACATTCATTCCAAAGGGTTGGTGCATTGCGACGTTAAATCGCGAAACGTTTTGATTAACGGTGACGGCGAGGCGAAACTTGCGGATTTCGGGTGCTCCAAATGGGCGAGCGAGCCCGACCCGATTGGAGGGACGCCGCTGTTTATGGCGCCGGAAGTGGCGCGTGGTGAACACCAAGGCCCCCCTTCCGACATTTGGTCAGTTGGGTGTACAGTCATCGAAATGGCAACCGCCGGCGGGTCTCCCTGGCCGGAATCCGACGGCGACCCGATTTCAACCCTCTACCGAATCGGGTATTCCGGCGAGTCGCCGGAAATTCCACCGGGTTTATCACAGAAAACAGAGGATTTTTTAGAAAAGTGTTTAAAGAGAAACCCAAATGAGAGATGGACGGCAAATCAGCTTCTGAAACACCCATTTATAAGCGAATTGAATTCAATTACAATCCCAAAGGAAATCAAGTCAGTTTATTCAGATTCAGATTATAATTCAGAATCTCCGACGAGTGTTCTAAAACAGGGGATTTGGAGCTCGATTACAGAATCGGGGACATTTAGATCAGATTTGTCGGCGGCGGAGCAGATCCGACGGCTGGCGGTGGACTCTGGGGAGCCGAGATGGAGAGAAGACGAGAATTGGATGACGATTCGAAGAGAAGTGAAAGATTGTAGTGATGATTGTTGGGGTGAAAAACAGAGAGAAAGTGGGGGCAAAGAGTGGTTGGAAATGGAATTAATTGATAGCAATGTTAGTGTTTGTAGGAATAGGAAGATTAATTGTGATTTCAATTCACATACTCAAGTGTATATCTATATGGTTGATTCAAATTATCATTTAAATATTGTTGACTAA | 1197 | 48.12 | MDWTRRHVIGHGSSATVYLAAASPAGHLFAVKSAEISRSQSLQKEQKILSLLASPYVVSYKGFEIREEQNGVVNFHLFMEFFPNGSLADVIRRRGRRPDEAAIGIYTRQLLHGLNYIHSKGLVHCDVKSRNVLINGDGEAKLADFGCSKWASEPDPIGGTPLFMAPEVARGEHQGPPSDIWSVGCTVIEMATAGGSPWPESDGDPISTLYRIGYSGESPEIPPGLSQKTEDFLEKCLKRNPNERWTANQLLKHPFISELNSITIPKEIKSVYSDSDYNSESPTSVLKQGIWSSITESGTFRSDLSAAEQIRRLAVDSGEPRWREDENWMTIRREVKDCSDDCWGEKQRESGGKEWLEMELIDSNVSVCRNRKINCDFNSHTQVYIYMVDSNYHLNIVD | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3780897 | 3783430 | - | Sed0021472.1 | Sed01g0494 | 699798 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0494 | 398 | PRINTS | Tyrosine kinase catalytic domain signature | 79 | 92 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g0494 | 398 | PRINTS | Tyrosine kinase catalytic domain signature | 178 | 200 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g0494 | 398 | PRINTS | Tyrosine kinase catalytic domain signature | 116 | 134 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g0494 | 398 | SMART | serkin_6 | 3 | 256 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g0494 | 398 | Pfam | Protein kinase domain | 5 | 256 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g0494 | 398 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 32 | IPR017441 | GO:0005524(InterPro) | |
Sed01g0494 | 398 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 122 | 134 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g0494 | 398 | CDD | STKc_MAPKKK | 2 | 256 | - | - | |
Sed01g0494 | 398 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 2 | 257 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Sed01g0494 | 398 | ProSiteProfiles | Protein kinase domain profile. | 3 | 256 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g0494 | 398 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 313 | - | - | |
Sed01g0494 | 398 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 302 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0494 | Sed-Chr1:3780897 | Sed04g3280 | Sed-Chr4:43183469 | 4.30E-99 | dispersed | |
Sed01g0494 | Sed-Chr1:3780897 | Sed01g0550 | Sed-Chr1:4117786 | 4.40E-17 | wgd | |
Sed01g0494 | Sed-Chr1:3780897 | Sed05g0913 | Sed-Chr5:7282013 | 9.90E-120 | wgd | |
Sed01g0494 | Sed-Chr1:3780897 | Sed05g2032 | Sed-Chr5:33553953 | 3.60E-98 | wgd | |
Sed01g0494 | Sed-Chr1:3780897 | Sed05g0960 | Sed-Chr5:7896020 | 1.20E-16 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78551 | PF00069 | Pkinase | 1.00E-53 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0494 | K20716 | - | csv:101208274 | 486.493 |