Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0494 ATGGACTGGACTAGACGCCACGTCATCGGCCACGGCTCCTCCGCCACCGTCTACCTCGCCGCCGCATCTCCCGCCGGCCACCTCTTTGCCGTCAAATCCGCCGAGATTTCTCGCTCGCAATCTCTTCAAAAAGAGCAAAAGATTCTTTCTTTATTAGCCTCTCCTTATGTAGTTTCTTATAAAGGATTTGAAATTCGTGAAGAACAAAATGGGGTCGTGAATTTCCATCTTTTTATGGAGTTTTTCCCCAACGGCTCCCTCGCGGACGTAATTCGCCGCCGTGGACGGCGGCCGGACGAGGCGGCGATCGGAATTTACACGAGGCAGTTACTTCACGGCCTGAATTACATTCATTCCAAAGGGTTGGTGCATTGCGACGTTAAATCGCGAAACGTTTTGATTAACGGTGACGGCGAGGCGAAACTTGCGGATTTCGGGTGCTCCAAATGGGCGAGCGAGCCCGACCCGATTGGAGGGACGCCGCTGTTTATGGCGCCGGAAGTGGCGCGTGGTGAACACCAAGGCCCCCCTTCCGACATTTGGTCAGTTGGGTGTACAGTCATCGAAATGGCAACCGCCGGCGGGTCTCCCTGGCCGGAATCCGACGGCGACCCGATTTCAACCCTCTACCGAATCGGGTATTCCGGCGAGTCGCCGGAAATTCCACCGGGTTTATCACAGAAAACAGAGGATTTTTTAGAAAAGTGTTTAAAGAGAAACCCAAATGAGAGATGGACGGCAAATCAGCTTCTGAAACACCCATTTATAAGCGAATTGAATTCAATTACAATCCCAAAGGAAATCAAGTCAGTTTATTCAGATTCAGATTATAATTCAGAATCTCCGACGAGTGTTCTAAAACAGGGGATTTGGAGCTCGATTACAGAATCGGGGACATTTAGATCAGATTTGTCGGCGGCGGAGCAGATCCGACGGCTGGCGGTGGACTCTGGGGAGCCGAGATGGAGAGAAGACGAGAATTGGATGACGATTCGAAGAGAAGTGAAAGATTGTAGTGATGATTGTTGGGGTGAAAAACAGAGAGAAAGTGGGGGCAAAGAGTGGTTGGAAATGGAATTAATTGATAGCAATGTTAGTGTTTGTAGGAATAGGAAGATTAATTGTGATTTCAATTCACATACTCAAGTGTATATCTATATGGTTGATTCAAATTATCATTTAAATATTGTTGACTAA 1197 48.12 MDWTRRHVIGHGSSATVYLAAASPAGHLFAVKSAEISRSQSLQKEQKILSLLASPYVVSYKGFEIREEQNGVVNFHLFMEFFPNGSLADVIRRRGRRPDEAAIGIYTRQLLHGLNYIHSKGLVHCDVKSRNVLINGDGEAKLADFGCSKWASEPDPIGGTPLFMAPEVARGEHQGPPSDIWSVGCTVIEMATAGGSPWPESDGDPISTLYRIGYSGESPEIPPGLSQKTEDFLEKCLKRNPNERWTANQLLKHPFISELNSITIPKEIKSVYSDSDYNSESPTSVLKQGIWSSITESGTFRSDLSAAEQIRRLAVDSGEPRWREDENWMTIRREVKDCSDDCWGEKQRESGGKEWLEMELIDSNVSVCRNRKINCDFNSHTQVYIYMVDSNYHLNIVD 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3780897 3783430 - Sed0021472.1 Sed01g0494 699798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0494 398 PRINTS Tyrosine kinase catalytic domain signature 79 92 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0494 398 PRINTS Tyrosine kinase catalytic domain signature 178 200 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0494 398 PRINTS Tyrosine kinase catalytic domain signature 116 134 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0494 398 SMART serkin_6 3 256 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0494 398 Pfam Protein kinase domain 5 256 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0494 398 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Sed01g0494 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g0494 398 CDD STKc_MAPKKK 2 256 - -
Sed01g0494 398 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 257 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed01g0494 398 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0494 398 Gene3D Transferase(Phosphotransferase) domain 1 2 313 - -
Sed01g0494 398 SUPERFAMILY Protein kinase-like (PK-like) 2 302 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0494 Sed-Chr1:3780897 Sed04g3280 Sed-Chr4:43183469 4.30E-99 dispersed
Sed01g0494 Sed-Chr1:3780897 Sed01g0550 Sed-Chr1:4117786 4.40E-17 wgd
Sed01g0494 Sed-Chr1:3780897 Sed05g0913 Sed-Chr5:7282013 9.90E-120 wgd
Sed01g0494 Sed-Chr1:3780897 Sed05g2032 Sed-Chr5:33553953 3.60E-98 wgd
Sed01g0494 Sed-Chr1:3780897 Sed05g0960 Sed-Chr5:7896020 1.20E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78551 PF00069 Pkinase 1.00E-53 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0494 K20716 - csv:101208274 486.493