Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0541 | ATGCCAAAGAATAAGGGAAAGGGAGGTAAAAACAGGAAGAGAGGAAAGAATGAAGCAGATGATGAGAAGCGTGAGCTTGTGTTCAAGGAAGCTGGTCAGGAGTATGCACAAGTCCTCAGAATGTTGGGGAACGGTCGGTGCGAGGCAATGTGCATAGATGGCACAAAGCGCCTTTGCCATATCCGGGGGAAGATGCACAAGAAGGTCTGGATTGAAGCTGGTGATATCATACTTGTTGGTCTTCGTGACTATCAGGATGGCAAAGCTGATGTCATCCTCAAGTATATGCGATACGAAGCAAGGCTGTTGAAGGCATATGGTGAGCTTCCTGACAGCACAAGTCTCGACGAAGGTATTGCCAGTGGTATCGATGATGGTGGGGCTGATGATTATCTGGAGTTTAACTTTTCAAGTATGATTGGATGA | 426 | 46.71 | MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEARLLKAYGELPDSTSLDEGIASGIDDGGADDYLEFNFSSMIG | 141 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4034828 | 4037577 | + | Sed0017793.1 | Sed01g0541 | 699845 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0541 | 141 | Gene3D | - | 2 | 139 | IPR012340 | - | |
Sed01g0541 | 141 | ProSiteProfiles | S1 domain IF1 type profile. | 22 | 96 | IPR006196 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed01g0541 | 141 | PANTHER | EIF-1A | 1 | 125 | IPR001253 | GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0006413(InterPro)|GO:0006413(PANTHER) | |
Sed01g0541 | 141 | CDD | S1_IF1A | 33 | 109 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed01g0541 | 141 | SMART | eIF1neu4 | 28 | 110 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed01g0541 | 141 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Sed01g0541 | 141 | SUPERFAMILY | Nucleic acid-binding proteins | 2 | 126 | IPR012340 | - | |
Sed01g0541 | 141 | ProSitePatterns | Eukaryotic initiation factor 1A signature. | 41 | 63 | IPR018104 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed01g0541 | 141 | Pfam | Translation initiation factor 1A / IF-1 | 32 | 93 | IPR006196 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed01g0541 | 141 | NCBIfam | translation initiation factor eIF-1A | 14 | 110 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed01g0541 | 141 | Hamap | Translation initiation factor 1A [eif1a]. | 16 | 110 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0541 | Sed-Chr1:4034828 | Sed12g0635 | Sed-Chr12:3774980 | 1.00E-63 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0541 | K03236 | - | mdm:103404973 | 223.016 |