Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0541 ATGCCAAAGAATAAGGGAAAGGGAGGTAAAAACAGGAAGAGAGGAAAGAATGAAGCAGATGATGAGAAGCGTGAGCTTGTGTTCAAGGAAGCTGGTCAGGAGTATGCACAAGTCCTCAGAATGTTGGGGAACGGTCGGTGCGAGGCAATGTGCATAGATGGCACAAAGCGCCTTTGCCATATCCGGGGGAAGATGCACAAGAAGGTCTGGATTGAAGCTGGTGATATCATACTTGTTGGTCTTCGTGACTATCAGGATGGCAAAGCTGATGTCATCCTCAAGTATATGCGATACGAAGCAAGGCTGTTGAAGGCATATGGTGAGCTTCCTGACAGCACAAGTCTCGACGAAGGTATTGCCAGTGGTATCGATGATGGTGGGGCTGATGATTATCTGGAGTTTAACTTTTCAAGTATGATTGGATGA 426 46.71 MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEARLLKAYGELPDSTSLDEGIASGIDDGGADDYLEFNFSSMIG 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4034828 4037577 + Sed0017793.1 Sed01g0541 699845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0541 141 Gene3D - 2 139 IPR012340 -
Sed01g0541 141 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Sed01g0541 141 PANTHER EIF-1A 1 125 IPR001253 GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0006413(InterPro)|GO:0006413(PANTHER)
Sed01g0541 141 CDD S1_IF1A 33 109 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed01g0541 141 SMART eIF1neu4 28 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed01g0541 141 MobiDBLite consensus disorder prediction 1 23 - -
Sed01g0541 141 SUPERFAMILY Nucleic acid-binding proteins 2 126 IPR012340 -
Sed01g0541 141 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed01g0541 141 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Sed01g0541 141 NCBIfam translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed01g0541 141 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0541 Sed-Chr1:4034828 Sed12g0635 Sed-Chr12:3774980 1.00E-63 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0541 K03236 - mdm:103404973 223.016