Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0550 ATGGTCCCTGCCGCCTCGAATTCGACGCAAGAAAAACGAACTGAACGGAACAGAGAGAGAGGAAGTTTCCGGTACGGCGTCGCCGCCGAGATGCCAGCAGAAAATTCAATTCCATTTGATCGAGATGCAGAGCCTTTTGCTGAGGTTGATCCAACTGGAAGGTTTGGGCGATACGACATTCTTCTTGGGTCTGGAGCAGTGAAGAAAGTTTATAGGGCATTTGATCAGGAGGAAGGTATAGAGGTTGCTTGGAATCAAGTTCGATTGAGAAGTTTTAGTGGGGATCCAGTGTTCATCAACCGTTTGAGATCTGAGGTTCAGCTTCTGAGTACGTTAAACAACAAATATATCATTGTTTGCTACAGTGTGTGGAATGATGATGAGCACCATATGTTGAATTTCATTACCGAGGTGTGCACATCAGGAAATCTGAGGGATTATCGTAAGAAACATCGACATGTGTCAGTTAAGGCCTTGAAGAAATGGTCAAAGCAGGTACTTGAGGGATTGGATTATCTCCATACTCATGAGCCTTGCATTATTCACAGAGATCTCAACTGCAGTAACATATTTGTTAATGGGAATATTGGCCAGGTGAAAATAGGTGATCTGGGTTTGGCAGCCATAGTTGGTAGGAGCCATGCTGCACACTCAATCATAGGCACACCAGAGTACATGGCACCAGAGCTGTATGAGGAAAATTACACAGAGATGGTGGATATATACTCATTCGCGATGTGTTTGCTCGAGATGGTTACAATGGAGATACCATACAGCGAATGCGACAGCATTGCCAAGATATACAAGAAGGTGACAACTGGAGTAATGCCCCAAGCATTAGACAAAGTGGCGGATGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAACCAAGGGCAAGGCCTTCCGCTACTGAACTTCTCAAGGACCCCTTTTTCGATGAAGTCAGGGATGATGATTCCGAACAGAGTTAA 978 44.89 MVPAASNSTQEKRTERNRERGSFRYGVAAEMPAENSIPFDRDAEPFAEVDPTGRFGRYDILLGSGAVKKVYRAFDQEEGIEVAWNQVRLRSFSGDPVFINRLRSEVQLLSTLNNKYIIVCYSVWNDDEHHMLNFITEVCTSGNLRDYRKKHRHVSVKALKKWSKQVLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGLAAIVGRSHAAHSIIGTPEYMAPELYEENYTEMVDIYSFAMCLLEMVTMEIPYSECDSIAKIYKKVTTGVMPQALDKVADDEVRAFIEKCIAQPRARPSATELLKDPFFDEVRDDDSEQS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4117786 4120750 - Sed0019975.1 Sed01g0550 699854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0550 325 Gene3D Transferase(Phosphotransferase) domain 1 139 320 - -
Sed01g0550 325 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 44 315 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed01g0550 325 CDD STKc_WNK 54 314 - -
Sed01g0550 325 Pfam Protein kinase domain 62 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0550 325 FunFam probable serine/threonine-protein kinase WNK9 139 320 - -
Sed01g0550 325 ProSiteProfiles Protein kinase domain profile. 56 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g0550 325 MobiDBLite consensus disorder prediction 1 25 - -
Sed01g0550 325 FunFam Probable serine/threonine-protein kinase WNK1 41 137 - -
Sed01g0550 325 SUPERFAMILY Protein kinase-like (PK-like) 50 315 IPR011009 -
Sed01g0550 325 Gene3D Phosphorylase Kinase; domain 1 41 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0550 Sed-Chr1:4117786 Sed01g1621 Sed-Chr1:11779009 1.70E-98 dispersed
Sed08g2940 Sed-Chr8:40156396 Sed01g0550 Sed-Chr1:4117786 1.10E-120 transposed
Sed01g0494 Sed-Chr1:3780897 Sed01g0550 Sed-Chr1:4117786 4.40E-17 wgd
Sed01g0550 Sed-Chr1:4117786 Sed05g0960 Sed-Chr5:7896020 7.70E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78552 PF00069 Pkinase 1.60E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0550 K08867 - csv:101222153 572.778