Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0550 | ATGGTCCCTGCCGCCTCGAATTCGACGCAAGAAAAACGAACTGAACGGAACAGAGAGAGAGGAAGTTTCCGGTACGGCGTCGCCGCCGAGATGCCAGCAGAAAATTCAATTCCATTTGATCGAGATGCAGAGCCTTTTGCTGAGGTTGATCCAACTGGAAGGTTTGGGCGATACGACATTCTTCTTGGGTCTGGAGCAGTGAAGAAAGTTTATAGGGCATTTGATCAGGAGGAAGGTATAGAGGTTGCTTGGAATCAAGTTCGATTGAGAAGTTTTAGTGGGGATCCAGTGTTCATCAACCGTTTGAGATCTGAGGTTCAGCTTCTGAGTACGTTAAACAACAAATATATCATTGTTTGCTACAGTGTGTGGAATGATGATGAGCACCATATGTTGAATTTCATTACCGAGGTGTGCACATCAGGAAATCTGAGGGATTATCGTAAGAAACATCGACATGTGTCAGTTAAGGCCTTGAAGAAATGGTCAAAGCAGGTACTTGAGGGATTGGATTATCTCCATACTCATGAGCCTTGCATTATTCACAGAGATCTCAACTGCAGTAACATATTTGTTAATGGGAATATTGGCCAGGTGAAAATAGGTGATCTGGGTTTGGCAGCCATAGTTGGTAGGAGCCATGCTGCACACTCAATCATAGGCACACCAGAGTACATGGCACCAGAGCTGTATGAGGAAAATTACACAGAGATGGTGGATATATACTCATTCGCGATGTGTTTGCTCGAGATGGTTACAATGGAGATACCATACAGCGAATGCGACAGCATTGCCAAGATATACAAGAAGGTGACAACTGGAGTAATGCCCCAAGCATTAGACAAAGTGGCGGATGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAACCAAGGGCAAGGCCTTCCGCTACTGAACTTCTCAAGGACCCCTTTTTCGATGAAGTCAGGGATGATGATTCCGAACAGAGTTAA | 978 | 44.89 | MVPAASNSTQEKRTERNRERGSFRYGVAAEMPAENSIPFDRDAEPFAEVDPTGRFGRYDILLGSGAVKKVYRAFDQEEGIEVAWNQVRLRSFSGDPVFINRLRSEVQLLSTLNNKYIIVCYSVWNDDEHHMLNFITEVCTSGNLRDYRKKHRHVSVKALKKWSKQVLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGLAAIVGRSHAAHSIIGTPEYMAPELYEENYTEMVDIYSFAMCLLEMVTMEIPYSECDSIAKIYKKVTTGVMPQALDKVADDEVRAFIEKCIAQPRARPSATELLKDPFFDEVRDDDSEQS | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4117786 | 4120750 | - | Sed0019975.1 | Sed01g0550 | 699854 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0550 | 325 | Gene3D | Transferase(Phosphotransferase) domain 1 | 139 | 320 | - | - | |
Sed01g0550 | 325 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 44 | 315 | IPR050588 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER) | |
Sed01g0550 | 325 | CDD | STKc_WNK | 54 | 314 | - | - | |
Sed01g0550 | 325 | Pfam | Protein kinase domain | 62 | 314 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g0550 | 325 | FunFam | probable serine/threonine-protein kinase WNK9 | 139 | 320 | - | - | |
Sed01g0550 | 325 | ProSiteProfiles | Protein kinase domain profile. | 56 | 314 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g0550 | 325 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Sed01g0550 | 325 | FunFam | Probable serine/threonine-protein kinase WNK1 | 41 | 137 | - | - | |
Sed01g0550 | 325 | SUPERFAMILY | Protein kinase-like (PK-like) | 50 | 315 | IPR011009 | - | |
Sed01g0550 | 325 | Gene3D | Phosphorylase Kinase; domain 1 | 41 | 137 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0550 | Sed-Chr1:4117786 | Sed01g1621 | Sed-Chr1:11779009 | 1.70E-98 | dispersed | |
Sed08g2940 | Sed-Chr8:40156396 | Sed01g0550 | Sed-Chr1:4117786 | 1.10E-120 | transposed | |
Sed01g0494 | Sed-Chr1:3780897 | Sed01g0550 | Sed-Chr1:4117786 | 4.40E-17 | wgd | |
Sed01g0550 | Sed-Chr1:4117786 | Sed05g0960 | Sed-Chr5:7896020 | 7.70E-163 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78552 | PF00069 | Pkinase | 1.60E-50 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0550 | K08867 | - | csv:101222153 | 572.778 |