Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0551 ATGCAAGCTTCTCAGCTTCATAGAGGCCAACATATGTCAAAGAGACTATGCTATCAGCCACTTCAAGGAGTGGATGCCCACTATTTCTCTCATTTTCAAACTTTAGGTCGTCAATTGCATTCCAGTGCTGGCAACCAAAGAGCTCTGTTCCATGTTCAAGACATTGCTGATCAGTACTGCACTCTGGAGTCGTCCTCGGGAAGTCACGGCTATGCAGCTCAGAACTCGACATCGACCGTTACTTTCTCACCCAATGGAAGTCCAGTTTCACAACAGAACTCTCGTTCAAATCCTTCTGATCAGCGTAATTCCACTGACAATACGTACGGTTCCCCAGTAAGCGGATCCAGCATAACACATGATGTTAGTGATTTTAAGCACAAACTGCAAGAATTAGAAACTGTGATGCTTGGCCCTGATTCTGATATTATTGATAGTTCAGATGGTATCTACCAGGAGGAAACAGACAATCCAGAGATGGGAAGTTGGGGACAAGTGATGGAAGCCATCACAAAAGGAAACTTAAAAAATACCCTAATAGCTTGTGCTAAAGCGGTATCGGATAATGATGCTTTAATGGCACAGTGGCTTATGGATGAATTGCGCAGGATGGTGTCTGTTCGTGGCGAACCGATGCAGCGGTTGGGAGCTTATATGTTGGAGGGGCTGGTTGCACGGTTAGCCTCCTCTGGCAGTAGCATCTATAAATCTTTGAGATGCAAGGAACCAGCAAGCGCTGAGCTCCTCTCTAATATGCACGTTCTTTACGAGGTTTGTCCATACTTCAAATTCGGGTACATGTCTGCAACTGGTGCTATTGCAGAAGCCATGAAAGATGAAGACAGAGTTCACATCATTGATTTCCAAATTTCTCAGGGTACTCAGTGGATCACTTTGATTCAAGCTTTTGCACGCAGGCCCGGTGGACCGCCTCACATTTGTATAACAGGAATAGATGATCCTGCATCAGCTTATGCTCGTGGAGGCGGGTTAGATATCGTTGGGAAGAGGCTTTCCAAGTTGGCAAAGTTATTTAAGGTGCCATTTGAGTTTCACTCTGTTGCCATTTCAGGCTGTGATGTTCAGCAAAAACATCTAGGCATCAGGCGAGGGGAGGCATTAGCAGTGAATTTCGCGTTCATGCTACACCATATGTCAGATGAGAGCGTAAGCACCGAAAACCATCGAGATAGACTGTTGAGGCTGGTTAAGGGTCTGTCTCCAAAGGTAGTGACCCTTGTTGAACAAGAATCCAACACAAACACTGCTGCATTCTTTCCCCGGTTTATCGAAACGCTAGATTACTACAAGGCCATGTTTGAATCTATCGACGTTACTCTTCCAAGGCAACACAAGGAGCGAATCAACATCGAGCAGCATTGTCTAGCCAGGGAAGTTGTCAACATACTAGCATGTGAAGGGGCTGAGAGAGTGGAACGACATGAGCTACTCGGAAAGTGGAGACTGCGATTCGCAATGGCAGGATTCACACCTTACCCATTAAGCTCTTTGGTGAATGGTACCATCAAAACTTTATTAGATAACTATTCTAACAGGTATAGGCTTGAAGAGAGAGAAGGGGCTTTATATCTAGGCTGGATGGATAGGGATTTGGTTGCTTCTTGTGCATGGAAGTGA 1638 45.36 MQASQLHRGQHMSKRLCYQPLQGVDAHYFSHFQTLGRQLHSSAGNQRALFHVQDIADQYCTLESSSGSHGYAAQNSTSTVTFSPNGSPVSQQNSRSNPSDQRNSTDNTYGSPVSGSSITHDVSDFKHKLQELETVMLGPDSDIIDSSDGIYQEETDNPEMGSWGQVMEAITKGNLKNTLIACAKAVSDNDALMAQWLMDELRRMVSVRGEPMQRLGAYMLEGLVARLASSGSSIYKSLRCKEPASAELLSNMHVLYEVCPYFKFGYMSATGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFARRPGGPPHICITGIDDPASAYARGGGLDIVGKRLSKLAKLFKVPFEFHSVAISGCDVQQKHLGIRRGEALAVNFAFMLHHMSDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFIETLDYYKAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTPYPLSSLVNGTIKTLLDNYSNRYRLEEREGALYLGWMDRDLVASCAWK 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4124622 4128651 - Sed0012924.1 Sed01g0551 699855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0551 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
Sed01g0551 545 Pfam GRAS domain family 175 545 IPR005202 -
Sed01g0551 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 135 544 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed01g0551 545 MobiDBLite consensus disorder prediction 66 118 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0551 Sed-Chr1:4124622 Sed01g0553 Sed-Chr1:4124622 0.00E+00 dispersed
Sed01g0551 Sed-Chr1:4124622 Sed01g0552 Sed-Chr1:4124622 0.00E+00 tandem
Sed03g1115 Sed-Chr3:6875616 Sed01g0551 Sed-Chr1:4124622 6.70E-58 transposed
Sed05g2687 Sed-Chr5:38266944 Sed01g0551 Sed-Chr1:4124622 1.10E-52 transposed
Sed08g2939 Sed-Chr8:40146524 Sed01g0551 Sed-Chr1:4124622 1.10E-177 transposed
Sed01g0551 Sed-Chr1:4124622 Sed05g0961 Sed-Chr5:7904776 8.90E-273 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37119 PF03514 GRAS 8.50E-134 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0551 K27748 - csv:101221914 971.459