Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0554 ATGTCTTTGAGCTGCAAGTTTTCTACCTTTAATGGAAAGTTTCCATCTGGGGTTAAGCTGAAGAAGGCTAAGGAGCATCTGTGTTTGTTAAATTCAACCGGAAAATGGAAGATGAAGCTTCTCTTTTTATGGATTTTTGCGGTAGTAGTTATAGTTTTGAGAAGTTGGTTTTGCTTGCGTTCGTATGATGAGAATAGTGGAACGAAACTGAAGATGGAAGAAACTAGAACTTTGCTGCGACATTTTAATGTTAGTGAGAATCAGCTTCAAGCTTTAGCCTCCTCCTTATCCAAATCAGATCGGATGTCATCCATGGGGTGCCCCAATGATTTTGGATCAGACACATCACAATTGGATGGAATTGCTTGTGCCCTGAGGTTACTGTACTGGGAACCAGATTTTCATAAGCAGTATGTATGGGCTGAAGAAAGTGCAGATTCCAGTATTGGGCAGTGCCCAATTCGAACTGAGAAGATCCCTGAAAATTGTGACCAATTATTCGCTGAGGACATAACTGTTCCATTTGCTCCAGACTTATCTGTCTCTTTACTTTCTACTGGAAATCAGCTTTGTGGAAAGATAACTGAACAAGCAGTAGTTCTATGGTGCTTCTTGGGAAAGCACGGGAAGAGTTTTTGTAGTTCGTTGATTGGATGTTTTTGGGTTCTCTTTGGAGTGATAGCGTTACAGAAAATGTCTGGTTTTCATCTAAAATTGAGAAACAAGAAACATCCAAAACCAAATCAGCCACTGGTTCATCAACATTGGGGCTTACCATGGCATCAACAAGTCAAAGATTCTCCCAAAGGAGCTGGGAAATGGAGGAAGGTGCTTCTACGAATATTTATTGTAGCTGGGATCGTTGGGTCCATTTGGTTATTTTGGTACCTGAACAAGACAGCCATTTTGAGAAGAGAAGAAACACTCACAAACATGTGTGATGAGCGAGCCAGGATGTTGCAGGACCAGTTTAATGTTAGCTTGAACCATGTTCATGCATTGGCCCTTCTCACCTCTACCTTCCACCACGGAAAACAACCTTCTGCCATTGATCAGAAAACATTTGGTGAGTATACAGAAAGAACAGCCTTTGAAAGACCACTAACGAGTGGTGTGGCTTATGCTTTAAAAGTTGATCACTCAGAAAGGGAGCAATTTGAGAAGATGCATGGATGGACAATAAAGAAAATGGCGACAGAGGACCAAACTCTTGTTCAAGATTGTAATCCAGATAATTTGGATCCTGCACCAATTCAAGATGAATATGCACCTGTCATATTTTCTCAAGAAACGGTCGCTCATATAGTTTCTATCGACATGATGTCTGGAAAAGAAGATCGTGAGAACATATTGCGAGCTAGAGCTTCTGGAAAGGGAGTGCTTACGTCTCCTTTTAAGCTTTTAAAATCTAATCACCTTGGAGTTGTCCTCACATTTACTGTGTATAACACTGATCTCCCACCAGATGCTACTGCCGAGCAACGTATTGAAGCGACTGTTGGTTATCTCGGTGCATCTTATGATATCCCCTCACTGGTGGAAAAGCTTCTGCATCAACTTGCTAGCAAGCAGACAATTGTGGTGAATGTTTATGATACAACCAATAATTCTGCTCCCATCAACATGTATGGTTCTGATTTTGTCGATACTGGGCTACTGCGTATTAGTAAACTTGATTTTGGGGATCCATTAAGAAGGCATGAGATGCATTGTAGATTCAAGCATAAACCTCCACCTCCATGGACAGCTATCAATTCATCAGTAGGCGTTCTAATCATTACTTTGCTGGTTGGCCATATTTTTCACGCAGCCATAAGTCGGATTGCGAAAGTGGAGAATGACTATCACAAGATGATGGGGCTTAAAAGTCGTGCCGAAGCTGCTGACGTGGCAAAATCACAGTTTCTGGCAACAGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGCATGCTAAAATTACTGATGGACACTAACCTTGATCTGAATCAACTGGATTTTGCCCGGACTGCTCACGAGAGTGGAAAAGATCTGATATCACTTATAAATAAGGTTCTTGATCAAGCTAAGATAGAATCACGTAGGCTTGAACTTGAATCTGTACCTTTCGATATGCGTACTATACTTGATAATGTTCTCTCACCTTTTTCAATGAAATCTATTGACAAGGGAATTGAGTTGGCTGTTTATGTCTCTGATTTGGTGCCTGAAGTTGTCATTGGTGACCCTGGGCGCTTTCGTCAAATAATTACTCATCTGGTTGGAAACTCTGTCAAGTTTACTCATAAAAAAGGACACATATTAGTCTCAGTGCATCTGGCTGATGAAGTGAGAGGCTCGGTTGATTTTATGGACATAGTGCTTAGACAAGGCATGTACTTAGTTGGCGATACATCAAGCAATAGTTGTACTTCATTCAGTGGGTTACCTGTGGTGAATAGATGGAAAAGCTGGGAGGATTTCAAAAAGTTCAGCCGGACAGATGCTGTGGAGGAACCCAAAACTATTCGAATACTTGTGACTGTTGAGGATACAGGTGTAGGAATTCCCCAAGATGCACAAAGCCGAATCTTCACTCCTTTTATGCAGGCTGATAGTTCCACTTCCCGAACATATGGCGGCACTGGAATAGGATTGAGTATTAGCGAACGTTTGGTGGATCTAATGGATGGGGAGATTGGGTTTGTGAGTGAGCCGGGTATAGGTAGCACATTTTCGTTTATGGTTTCTTTCCAGAAAGGAGAAATAAGTTTTCTGGATACCAGATGGTCACAGTATGATCTGGGTGTGTTGGAGTTCCAGGGGCTAAGAGCGTTAATAATAGATAATAGCTGCATTCGAGCCGAGGTCACAAGATATCATCTGCAGAGGCTGGGAATTTCTGTTGATATAGCTCTGAGTGCAGAATCTGCTTATCAGTACCTATCTAATACTTCCAACACAAGATCATCGACACAATTGGCCATGATTCTTATAGACAAAGACATTTGGGACAAGAAAGTGGGTCTGAAGTTCCATCTTTTGTTTAAAGAGCATGTGGATAGTAGTGTTACAAATCTCCAGATGAATACTCCAAAGCTCTTTCTCTTGGCAAACCCCATTAGCTCCAATGAGCTGAACGAACTTAATTCTTCTGGTCATGTAAATAATGTATTAATTAAACCTCTTCAGTTAAACATGTTGGTTAGTTGCTTCCATGAAGCCTTTGGGATCGAGAAGAAGAATCGAGTAATGATAAAAAAACCTACTACGCTGAAGAACCTGCTGAAAGATAAACATATTTTGGTTGTGGATGACAACGCAGTAAACAGAAGGGTAGCAGAAGGTGCCCTAAAGAAATATGGAGCAGTTGTAACTTGTGTAAAATGTGGAAAGGATGCTGTGGCTCTCCTCAACCCTCCACACAACTTTGATGCTTGCTTCATGGACCTCCAGATGCCTGAGATGGATGGCTATGAAGCTACAAGACAGGTCCGTGCTGTAGAAAGTGGGTTGAATGCGAAACTTACATCGGGAGAAGTGTCAACTGAGGACAATGATGTCCATTGGCACACACCAATATTTGCTATGACGGCAGATTTAATTCAGGCTATGAATGAAGAGTGCATGAAGTGTGGGATGGATGGTTACGTAGCTAAGCCATTTGAAGAAGAGCAACTTCATTCAGCTCTAGCATGCTTTTTCGAGACTACTTGA 3702 41.57 MSLSCKFSTFNGKFPSGVKLKKAKEHLCLLNSTGKWKMKLLFLWIFAVVVIVLRSWFCLRSYDENSGTKLKMEETRTLLRHFNVSENQLQALASSLSKSDRMSSMGCPNDFGSDTSQLDGIACALRLLYWEPDFHKQYVWAEESADSSIGQCPIRTEKIPENCDQLFAEDITVPFAPDLSVSLLSTGNQLCGKITEQAVVLWCFLGKHGKSFCSSLIGCFWVLFGVIALQKMSGFHLKLRNKKHPKPNQPLVHQHWGLPWHQQVKDSPKGAGKWRKVLLRIFIVAGIVGSIWLFWYLNKTAILRREETLTNMCDERARMLQDQFNVSLNHVHALALLTSTFHHGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVDHSEREQFEKMHGWTIKKMATEDQTLVQDCNPDNLDPAPIQDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFTVYNTDLPPDATAEQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNNSAPINMYGSDFVDTGLLRISKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFHAAISRIAKVENDYHKMMGLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDLNQLDFARTAHESGKDLISLINKVLDQAKIESRRLELESVPFDMRTILDNVLSPFSMKSIDKGIELAVYVSDLVPEVVIGDPGRFRQIITHLVGNSVKFTHKKGHILVSVHLADEVRGSVDFMDIVLRQGMYLVGDTSSNSCTSFSGLPVVNRWKSWEDFKKFSRTDAVEEPKTIRILVTVEDTGVGIPQDAQSRIFTPFMQADSSTSRTYGGTGIGLSISERLVDLMDGEIGFVSEPGIGSTFSFMVSFQKGEISFLDTRWSQYDLGVLEFQGLRALIIDNSCIRAEVTRYHLQRLGISVDIALSAESAYQYLSNTSNTRSSTQLAMILIDKDIWDKKVGLKFHLLFKEHVDSSVTNLQMNTPKLFLLANPISSNELNELNSSGHVNNVLIKPLQLNMLVSCFHEAFGIEKKNRVMIKKPTTLKNLLKDKHILVVDDNAVNRRVAEGALKKYGAVVTCVKCGKDAVALLNPPHNFDACFMDLQMPEMDGYEATRQVRAVESGLNAKLTSGEVSTEDNDVHWHTPIFAMTADLIQAMNEECMKCGMDGYVAKPFEEEQLHSALACFFETT 1233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4148903 4158611 - Sed0006258.1 Sed01g0554 699858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0554 1233 Pfam Response regulator receiver domain 1096 1226 IPR001789 GO:0000160(InterPro)
Sed01g0554 1233 Gene3D - 1088 1232 - -
Sed01g0554 1233 Gene3D CHASE domain 350 577 IPR042240 -
Sed01g0554 1233 Gene3D - 934 1083 - -
Sed01g0554 1233 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 685 911 IPR036890 -
Sed01g0554 1233 Pfam CHASE domain 349 543 IPR006189 -
Sed01g0554 1233 PRINTS Bacterial sensor protein C-terminal signature 840 854 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed01g0554 1233 PRINTS Bacterial sensor protein C-terminal signature 875 893 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed01g0554 1233 PRINTS Bacterial sensor protein C-terminal signature 858 868 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed01g0554 1233 PRINTS Bacterial sensor protein C-terminal signature 899 912 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed01g0554 1233 CDD HisKA 631 692 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed01g0554 1233 SMART CHASE_2 346 545 IPR006189 -
Sed01g0554 1233 ProSiteProfiles Response regulatory domain profile. 1095 1230 IPR001789 GO:0000160(InterPro)
Sed01g0554 1233 Gene3D - 297 349 - -
Sed01g0554 1233 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 620 697 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed01g0554 1233 Pfam His Kinase A (phospho-acceptor) domain 631 695 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed01g0554 1233 Gene3D - 600 694 - -
Sed01g0554 1233 SUPERFAMILY CheY-like 934 1071 IPR011006 -
Sed01g0554 1233 ProSiteProfiles CHASE domain profile. 346 570 IPR006189 -
Sed01g0554 1233 CDD HATPase_EvgS-ArcB-TorS-like 748 909 - -
Sed01g0554 1233 SMART HKATPase_4 743 915 IPR003594 -
Sed01g0554 1233 SMART HisKA_10 631 696 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed01g0554 1233 FunFam Histidine kinase 4 350 577 - -
Sed01g0554 1233 SUPERFAMILY CheY-like 1092 1227 IPR011006 -
Sed01g0554 1233 FunFam Histidine kinase 4 603 694 - -
Sed01g0554 1233 CDD REC_hyHK_CKI1_RcsC-like 1096 1226 - -
Sed01g0554 1233 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 839 913 IPR003594 -
Sed01g0554 1233 Gene3D - 697 917 IPR036890 -
Sed01g0554 1233 PANTHER TWO-COMPONENT HISTIDINE KINASE 264 1228 IPR050956 -
Sed01g0554 1233 ProSiteProfiles Histidine kinase domain profile. 638 915 IPR005467 -
Sed01g0554 1233 SMART REC_2 1094 1226 IPR001789 GO:0000160(InterPro)
Sed01g0554 1233 ProSiteProfiles Response regulatory domain profile. 939 1071 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0554 Sed-Chr1:4148903 Sed01g0556 Sed-Chr1:4148903 0.00E+00 dispersed
Sed01g0554 Sed-Chr1:4148903 Sed01g0555 Sed-Chr1:4148903 0.00E+00 tandem
Sed03g1967 Sed-Chr3:13684537 Sed01g0554 Sed-Chr1:4148903 3.20E-30 transposed
Sed01g0554 Sed-Chr1:4148903 Sed05g0964 Sed-Chr5:7944764 0.00E+00 wgd
Sed01g0554 Sed-Chr1:4148903 Sed05g2083 Sed-Chr5:34029170 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37122 PF03924 CHASE 1.50E-35 CL0165 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0554 K14489 - csv:101221294 2082.76