Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g0572 | ATGGCGGATTCCGATAACGAATCGGGAGGTCACAACAGCAACACGCACGGCGAGTTGTCGACGAAGGAACAGGACAGATTCTTGCCGATCGCGAACGTGAGCAGGATCATGAAGAAGGCGCTGCCAGCGAACGCGAAGATCTCGAAAGATGCGAAGGAGACCGTACAGGAATGCGTATCGGAGTTCATAAGCTTCATCACCGGAGAGGCGTCGGACAAGTGTCAGAGAGAGAAGAGGAAGACGATCAACGGCGACGATTTGCTGTGGGCGATGACGACGCTTGGATTCGAAGAGTACGTTGAACCGCTCAAGAGTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTGTGGGAAGACAAGGAGAGAAAGACGGCGGCGCTGGTGGACCTGCCGGCGGTGGAGGGACTAATGGCAGTGGTTCCGGCGGCGGCGGGTTTAACGGAGTTGGTGGAATGTATGGAGGGATGGTGATGATGGGGCATCATCAGGGCGGCGTTTATGGTGGCGCTGGTTTTCACCACATGGGAATCGGCGGCGGGAAGGGAGGAAGTGGTGGTTCCGGTACCGGACACCGGTAA | 588 | 56.29 | MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTVGRQGEKDGGAGGPAGGGGTNGSGSGGGGFNGVGGMYGGMVMMGHHQGGVYGGAGFHHMGIGGGKGGSGGSGTGHR | 195 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4274438 | 4276281 | + | Sed0006837.1 | Sed01g0572 | 699876 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g0572 | 195 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 11 | 127 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Sed01g0572 | 195 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 27 | 91 | IPR003958 | - | |
Sed01g0572 | 195 | SUPERFAMILY | Histone-fold | 24 | 126 | IPR009072 | GO:0046982(InterPro) | |
Sed01g0572 | 195 | FunFam | Nuclear transcription factor Y subunit B-3 | 16 | 135 | - | - | |
Sed01g0572 | 195 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Sed01g0572 | 195 | Gene3D | Histone, subunit A | 16 | 133 | IPR009072 | GO:0046982(InterPro) | |
Sed01g0572 | 195 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Sed01g0572 | 195 | MobiDBLite | consensus disorder prediction | 116 | 145 | - | - | |
Sed01g0572 | 195 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 58 | 74 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed01g0572 | 195 | PRINTS | CCAAT-binding transcription factor subunit A signature | 55 | 73 | - | - | |
Sed01g0572 | 195 | PRINTS | CCAAT-binding transcription factor subunit A signature | 74 | 92 | - | - | |
Sed01g0572 | 195 | PRINTS | CCAAT-binding transcription factor subunit A signature | 93 | 111 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0572 | Sed-Chr1:4274438 | Sed07g1707 | Sed-Chr7:15719286 | 5.10E-45 | dispersed | |
Sed01g0572 | Sed-Chr1:4274438 | Sed05g3059 | Sed-Chr5:40884007 | 1.50E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37127 | PF00808 | CBFD_NFYB_HMF | 1.80E-27 | CL0012 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g0572 | K08065 | - | csv:101219076 | 237.654 |