Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g0572 ATGGCGGATTCCGATAACGAATCGGGAGGTCACAACAGCAACACGCACGGCGAGTTGTCGACGAAGGAACAGGACAGATTCTTGCCGATCGCGAACGTGAGCAGGATCATGAAGAAGGCGCTGCCAGCGAACGCGAAGATCTCGAAAGATGCGAAGGAGACCGTACAGGAATGCGTATCGGAGTTCATAAGCTTCATCACCGGAGAGGCGTCGGACAAGTGTCAGAGAGAGAAGAGGAAGACGATCAACGGCGACGATTTGCTGTGGGCGATGACGACGCTTGGATTCGAAGAGTACGTTGAACCGCTCAAGAGTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTGTGGGAAGACAAGGAGAGAAAGACGGCGGCGCTGGTGGACCTGCCGGCGGTGGAGGGACTAATGGCAGTGGTTCCGGCGGCGGCGGGTTTAACGGAGTTGGTGGAATGTATGGAGGGATGGTGATGATGGGGCATCATCAGGGCGGCGTTTATGGTGGCGCTGGTTTTCACCACATGGGAATCGGCGGCGGGAAGGGAGGAAGTGGTGGTTCCGGTACCGGACACCGGTAA 588 56.29 MADSDNESGGHNSNTHGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTVGRQGEKDGGAGGPAGGGGTNGSGSGGGGFNGVGGMYGGMVMMGHHQGGVYGGAGFHHMGIGGGKGGSGGSGTGHR 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4274438 4276281 + Sed0006837.1 Sed01g0572 699876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g0572 195 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 127 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Sed01g0572 195 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Sed01g0572 195 SUPERFAMILY Histone-fold 24 126 IPR009072 GO:0046982(InterPro)
Sed01g0572 195 FunFam Nuclear transcription factor Y subunit B-3 16 135 - -
Sed01g0572 195 MobiDBLite consensus disorder prediction 1 17 - -
Sed01g0572 195 Gene3D Histone, subunit A 16 133 IPR009072 GO:0046982(InterPro)
Sed01g0572 195 MobiDBLite consensus disorder prediction 1 25 - -
Sed01g0572 195 MobiDBLite consensus disorder prediction 116 145 - -
Sed01g0572 195 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g0572 195 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Sed01g0572 195 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Sed01g0572 195 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0572 Sed-Chr1:4274438 Sed07g1707 Sed-Chr7:15719286 5.10E-45 dispersed
Sed01g0572 Sed-Chr1:4274438 Sed05g3059 Sed-Chr5:40884007 1.50E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37127 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g0572 K08065 - csv:101219076 237.654